About   Help   FAQ
Traf3ip3
Gene Detail
Symbol

Name
ID
Traf3ip3
TRAF3 interacting protein 3
MGI:2441706
Synonyms
6030423D04Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 1
97.62 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:193175453-193201703 bp, - strand
From VEGA annotation of GRCm38

  26251 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11885  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: TRAF3IP3
Gene Tree: Traf3ip3

Human
homologs
TRAF3IP3, TRAF3 interacting protein 3
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 80342
neXtProt AC: NX_Q9Y228

Human Synonyms: T3JAM

Human Chr (Location): 1q32; chr1:209756032-209782323 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Traf3ip3 interacts with 34 markers (Mir26b, Mir103-1, Mir103-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component integral component of membrane, membrane
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (108)    Tissues (14)    Images (43)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 108
cDNA source data(33)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase traf3ip3    NEW 
Molecular
reagents
All nucleic(37) cDNA(37)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000027078 (Evidence)
Ensembl Gene Model ENSMUSG00000037318 (Evidence)
Entrez Gene 215243 (Evidence)
UniGene 261259
DFCI TC1583547, TC1616497
DoTS DT.91350791, DT.94350493
NIA Mouse Gene Index U022220
Consensus CDS Project CCDS15634.1
International Mouse Phenotyping Consortium Status Traf3ip3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027078 VEGA Gene Model | MGI Sequence Detail 26251 C57BL/6J ±  kb
transcript OTTMUST00000129118 VEGA | MGI Sequence Detail 1854 Not Applicable 
polypeptide OTTMUSP00000069401 VEGA | MGI Sequence Detail 513 Not Applicable 

For the selected sequences
All sequences(69) RefSeq(2) UniProt(8)
Polymorphisms
SNPs within 2kb(354 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000016603 TRAF3-interacting JNK-activating modulator
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:209956 Liakath-Ali K, et al., Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen. Nat Commun. 2014;5:3540
All references(30)
Other
accession IDs
MGI:2138156

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/21/2015
MGI 5.22
The Jackson Laboratory