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5430427N15Rik Gene Detail
Summary
  • Symbol
    5430427N15Rik
  • Name
    RIKEN cDNA 5430427N15 gene
  • Synonyms
    4930471E07Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2441699
    NCBI Gene: 319220
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr5:103502172-103504564 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    24 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2441699
 lncRNA gene Chr5:103502172-103504564 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006726
 lincRNA gene Chr5:104982209-104984601 (-)
A/J MGP_AJ_G0006720
 lincRNA gene Chr5:101039962-101042354 (-)
AKR/J MGP_AKRJ_G0006690
 lincRNA gene Chr5:104294910-104297302 (-)
BALB/cJ MGP_BALBcJ_G0006695
 lincRNA gene Chr5:102100227-102102619 (-)
C3H/HeJ MGP_C3HHeJ_G0006641
 lincRNA gene Chr5:104706513-104708905 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006860
 lincRNA gene Chr5:109260421-109262813 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006117
 lincRNA gene Chr5:96192695-96195060 (-)
CAST/EiJ MGP_CASTEiJ_G0006564
 lincRNA gene Chr5:103404557-103407256 (-)
CBA/J MGP_CBAJ_G0006622
 lincRNA gene Chr5:113097155-113099547 (-)
DBA/2J MGP_DBA2J_G0006643
 lincRNA gene Chr5:101227813-101230205 (-)
FVB/NJ MGP_FVBNJ_G0006667
 lincRNA gene Chr5:100034484-100036876 (-)
LP/J MGP_LPJ_G0006727
 lincRNA gene Chr5:105553684-105556076 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006651
 lincRNA gene Chr5:118039175-118041567 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006862
 lincRNA gene Chr5:103835516-103837908 (-)
PWK/PhJ MGP_PWKPhJ_G0006503
 lincRNA gene Chr5:99679909-99682297 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006409
 lincRNA gene Chr5:101482933-101485337 (-)
WSB/EiJ MGP_WSBEiJ_G0006615
 lincRNA gene Chr5:104199945-104202298 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    3 involving 5430427N15Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    22
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000104684 Ensembl Gene Model | MGI Sequence Detail 2393 C57BL/6J ±  kb
transcript ENSMUST00000200007 Ensembl | MGI Sequence Detail 2393 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 2
Other
Accession IDs
less
MGI:1922235
References
more
  • Summaries
    All 14
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory