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Pgbd5 Gene Detail
Summary
  • Symbol
    Pgbd5
  • Name
    piggyBac transposable element derived 5
  • Synonyms
    2900019M05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2429955
    NCBI Gene: 209966
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:124369049-124434462 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 72.65 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1099 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2429955
protein coding gene Chr8:124369049-124439658 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034270
protein coding gene Chr8:128044636-128123124 (-)
A/J MGP_AJ_G0034250
protein coding gene Chr8:122751376-122823753 (-)
AKR/J MGP_AKRJ_G0034177
protein coding gene Chr8:126277547-126351175 (-)
BALB/cJ MGP_BALBcJ_G0034243
protein coding gene Chr8:122934862-123008601 (-)
C3H/HeJ MGP_C3HHeJ_G0033954
protein coding gene Chr8:126916537-126991384 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034763
protein coding gene Chr8:132338578-132413463 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031704
protein coding gene Chr8:115523085-115592267 (-)
CAST/EiJ MGP_CASTEiJ_G0033281
protein coding gene Chr8:127033440-127107723 (-)
CBA/J MGP_CBAJ_G0033927
protein coding gene Chr8:137175670-137257515 (-)
DBA/2J MGP_DBA2J_G0034083
protein coding gene Chr8:121909037-121979576 (-)
FVB/NJ MGP_FVBNJ_G0034027
protein coding gene Chr8:121073924-121149986 (-)
LP/J MGP_LPJ_G0034172
protein coding gene Chr8:128200754-128281916 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034074
protein coding gene Chr8:139281656-139358737 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034782
protein coding gene Chr8:126514108-126589569 (-)
PWK/PhJ MGP_PWKPhJ_G0032983
protein coding gene Chr8:121667471-121741469 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032822
protein coding gene Chr8:125158248-125229676 (-)
WSB/EiJ MGP_WSBEiJ_G0033398
protein coding gene Chr8:127237861-127314140 (-)



Homology
more
  • Human Ortholog
    PGBD5, piggyBac transposable element derived 5
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PGBD5, piggyBac transposable element derived 5
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 79605
    neXtProt AC: NX_Q8N414
    UniProt: Q8N414

  • Chr Location
    1q42.13; chr1:230321646-230425928 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 209966 NCBI Gene Model | MGI Sequence Detail 65414 C57BL/6J ±  kb
transcript NM_171824 RefSeq | MGI Sequence Detail 2854 C57BL/6  
polypeptide D3YZI9 UniProt | EBI | MGI Sequence Detail 523 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    Genomic 1
    cDNA 16

    Microarray probesets 3
Other
Accession IDs
less
MGI:1914507, MGI:2142643
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 4
  • Earliest
    J:80162 Bonaldo MF, et al., Normalization and subtraction: two approaches to facilitate gene discovery. Genome Res. 1996 Sep;6(9):791-806
  • Latest
    J:232147 Isbel L, et al., Trim33 Binds and Silences a Class of Young Endogenous Retroviruses in the Mouse Testis; a Novel Component of the Arms Race between Retrotransposons and the Host Genome. PLoS Genet. 2015 Dec;11(12):e1005693

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/16/2019
MGI 6.13
The Jackson Laboratory