Lrrtm2
Gene Detail

Symbol Name ID

Lrrtm2 leucine rich repeat transmembrane neuronal 2 MGI:2389174

Synonyms

C630011A14Rik, mKIAA0416

Feature Type

protein coding gene

Genetic Map

Chromosome 18

18.94 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr18:35209011-35215024 bp, - strand From Ensembl annotation of GRCm38   6014 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:65342  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 zebrafish

Gene Tree: Lrrtm2

Human homologs

Human Homolog		LRRTM2, leucine rich repeat transmembrane neuronal 2
NCBI Gene ID		26045
neXtProt AC		NX_O43300
Human Chr (Location)		5q31.2; chr5:138205079-138211057 (-)  GRCh37.p10

Gene Ontology (GO) classifications

All GO classifications: (10 annotations)

Process	synapse organization
Component	cell junction, excitatory synapse, ...
Function	neurexin family protein binding

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (3)    Tissues (2)    Images (3)
Theiler Stages: 17

Assay Type	Results
RNA in situ	3

cDNA source data(16)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress

Molecular reagents

All nucleic(20) cDNA(16) Primer pair(2) Other(2)
Microarray probesets(5)

Other database links

Ensembl Gene Model	ENSMUSG00000071862 (Evidence)
Entrez Gene	107065 (Evidence)
UniGene	39900
DFCI	TC1581215, TC1637288
NIA Mouse Gene Index	U038319
Consensus CDS Project	CCDS50251.1
International Mouse Knockout Project Status	Lrrtm2

Sequences

Length	Strain/Species
genomic	ENSMUSG00000071862	Ensembl Gene Model | MGI Sequence Detail	6014	C57BL/6J
transcript	ENSMUST00000091636	Ensembl | MGI Sequence Detail	5665	Not Applicable
polypeptide	ENSMUSP00000089225	Ensembl | MGI Sequence Detail	515	Not Applicable

All sequences(26) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(26 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001611	Leucine-rich repeat
InterPro	IPR025875	Leucine rich repeat 4
InterPro	IPR000372	Leucine-rich repeat-containing N-terminal
InterPro	IPR003591	Leucine-rich repeat, typical subtype
Protein Ontology	PR:000009947	leucine-rich repeat transmembrane neuronal protein 2

References

(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:188109 Tan SL, et al., Essential roles of the histone methyltransferase ESET in the epigenetic control of neural progenitor cells during development. Development. 2012 Oct;139(20):3806-16
All references(29)

Other accession IDs

MGI:2147278, MGI:2147387