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Sgcz
Gene Detail
 Symbol
Name
ID
Sgcz
sarcoglycan zeta
MGI:2388820
Synonyms C230085N17Rik
Feature Type protein coding gene
Genetic Map
Chromosome 8
23.31 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr8:37522298-38661508 bp, - strand
From VEGA annotation of GRCm38

  1139211 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:26726  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: sarcoglycan, beta/gamma/delta/zeta types
Gene Tree: Sgcz

Human
homologs
Human Homolog SGCZ, sarcoglycan, zeta
NCBI Gene ID 137868
neXtProt AC  NX_Q96LD1
Human Synonyms  ZSG1
Human Chr (Location)  8p22; chr8:14089864-15238283 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(2) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Sgcz interacts with 263 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process membrane organization
Component cytoplasm, cytoskeleton, ...
Function protein binding
External Resources: FuncBase
Expression
cDNA source data(8)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(8)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000031650 (Evidence)
Ensembl Gene ModelENSMUSG00000039539 (Evidence)
Entrez Gene244431 (Evidence)
UniGene210388
DFCITC1587935, TC1630383
DoTSDT.101129028, DT.87038263, DT.94127922
NIA Mouse Gene IndexU029746
Consensus CDS ProjectCCDS22251.2
International Mouse Knockout Project StatusSgcz
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031650 VEGA Gene Model | MGI Sequence Detail 1139211 C57BL/6J ±  kb
transcript OTTMUST00000078418 VEGA | MGI Sequence Detail 2389 Not Applicable 
polypeptide OTTMUSP00000041695 VEGA | MGI Sequence Detail 311 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(8) UniProt(3)
Polymorphisms SNPs within 2kb(13513 from dbSNP Build 137)    SNPs within 2kb including multiple locations(13523)
Protein-related
information
ResourceIDDescription
InterPro IPR006875 Sarcoglycan complex subunit protein
Protein Ontology PR:000014786 zeta-sarcoglycan
References (Earliest) J:79436 Wheeler MT, et al., zeta-Sarcoglycan, a novel component of the sarcoglycan complex, is reduced in muscular dystrophy. Hum Mol Genet. 2002 Sep 1;11(18):2147-54
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(28)
Other
accession IDs
MGI:2444342

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory