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Abca13 Gene Detail
Summary
  • Symbol
    Abca13
  • Name
    ATP-binding cassette, sub-family A (ABC1), member 13
  • Synonyms
    A930002G16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2388707
    NCBI Gene: 268379
  • Gene Overview
    MyGene.info: ABCA13
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr11:9191942-9684259 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      492318 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 6.13 cM, cytoband A2
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    ABCA13, ATP binding cassette subfamily A member 13
  • Vertebrate Orthologs
    7
  • Human Ortholog
    ABCA13, ATP binding cassette subfamily A member 13
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 154664
    neXtProt AC: NX_Q86UQ4
    UniProt: Q86UQ4

  • Chr Location
    7p12.3; chr7:48171424-48647497 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic OTTMUSG00000005151 VEGA Gene Model | MGI Sequence Detail 492318 C57BL/6J ±  kb
    transcript OTTMUST00000011516 VEGA | MGI Sequence Detail 16011 Not Applicable  
    polypeptide OTTMUSP00000005356 VEGA | MGI Sequence Detail 5034 Not Applicable  
    For the selected sequence
    Polymorphisms
    less
    • SNPs within 2kb
      2745 from dbSNP Build 142
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR003593 AAA+ ATPase domain
      IPR026082 ABC transporter A
      IPR017871 ABC transporter, conserved site
      IPR003439 ABC transporter-like
      IPR030371 ATP-binding cassette subfamily A member 12
      IPR027417 P-loop containing nucleoside triphosphate hydrolase
    Molecular
    Reagents
    less
    • All nucleic 14
      cDNA 12
      Primer pair 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2144330
    References
    more
    • Summaries
      All 30
      Developmental Gene Expression 3
      Gene Ontology 3
      Phenotypes 7
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    09/11/2018
    MGI 6.12
    The Jackson Laboratory