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Snx17
Gene Detail
Symbol

Name
ID
Snx17
sorting nexin 17
MGI:2387801
Synonyms
5830447M19Rik, b2b1625.1Clo, D5Ertd260e, mKIAA0064
Feature Type
protein coding gene
Genetic Map
Chromosome 5
17.26 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr5:31193227-31198900 bp, + strand
From VEGA annotation of GRCm38

  5674 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8838  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SNX17
Gene Tree: Snx17

Human
homologs
SNX17, sorting nexin 17
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 9784
neXtProt AC: NX_Q15036

Human Chr (Location): 2p23.3; chr2:27370496-27377533 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(21) : Chemically induced (ENU)(1) Gene trapped(16) Radiation induced(3) Targeted(1)
Genomic Mutations involving Snx17 (3)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Mutations Annotated to Human Diseases (1)    Phenotype Images(18)
Interactions
Snx17 interacts with 272 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (22 annotations)
Process protein transport, receptor-mediated endocytosis, ...
Component cytoplasm, cytoplasmic membrane-bounded vesicle, ...
Function lipid binding, low-density lipoprotein particle receptor binding, ...
External Resources: FuncBase
Expression
cDNA source data(164)
Other mouse links: Allen Institute   GENSAT   GEO   Expression Atlas
Other vertebrate links: Xenbase snx17 ; ZFIN snx17    NEW 
Molecular
reagents
All nucleic(166) cDNA(165) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000022491 (Evidence)
Ensembl Gene Model ENSMUSG00000029146 (Evidence)
Entrez Gene 266781 (Evidence)
UniGene 6118
DFCI TC1572484
NIA Mouse Gene Index U005438
Consensus CDS Project CCDS19177.1
International Mouse Phenotyping Consortium Status Snx17
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022491 VEGA Gene Model | MGI Sequence Detail 5674 C57BL/6J ±  kb
transcript OTTMUST00000053836 VEGA | MGI Sequence Detail 2018 Not Applicable 
polypeptide OTTMUSP00000025620 VEGA | MGI Sequence Detail 470 Not Applicable 

For the selected sequences
All sequences(62) RefSeq(4) UniProt(5)
Polymorphisms
SNPs within 2kb(26 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019749 Band 4.1 domain
InterPro IPR000299 FERM domain
InterPro IPR001683 Phox homologous domain
InterPro IPR000159 Ras-association
Protein Ontology PR:000015366 sorting nexin-17
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:222159 Li Y, et al., Global genetic analysis in mice unveils central role for cilia in congenital heart disease. Nature. 2015 May 28;521(7553):520-4
All references(40)
Other
accession IDs
MGI:1098612, MGI:1923317, MGI:2140966, MGI:5489919

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory