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Snx17
Gene Detail
 Symbol
Name
ID
Snx17
sorting nexin 17
MGI:2387801
Synonyms 5830447M19Rik, b2b1625.1Clo, D5Ertd260e, mKIAA0064
Feature Type protein coding gene
Genetic Map
Chromosome 5
17.26 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr5:31193227-31198900 bp, + strand
From VEGA annotation of GRCm38

  5674 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8838  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Snx17

Human
homologs
Human Homolog SNX17, sorting nexin 17
NCBI Gene ID 9784
neXtProt AC  NX_Q15036
Human Chr (Location)  2p23-p22; chr2:27370496-27377533 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(20) : Chemically induced (ENU)(1) Gene trapped(16) Radiation induced(2) Targeted(1)
Genomic Mutations involving Snx17 (2)
Incidental mutations (data from Mutagenetix , APF )
Alleles Annotated to Human Diseases(1)    Phenotype Images(14)
Interactions
Snx17 interacts with 272 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (22 annotations)
Process protein transport, receptor-mediated endocytosis, ...
Component cytoplasm, cytoplasmic membrane-bounded vesicle, ...
Function lipid binding, low-density lipoprotein particle receptor binding, ...
External Resources: FuncBase
Expression
cDNA source data(164)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas
Molecular
reagents
All nucleic(166) cDNA(165) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000022491 (Evidence)
Ensembl Gene ModelENSMUSG00000029146 (Evidence)
Entrez Gene266781 (Evidence)
UniGene6118
DFCITC1572484
NIA Mouse Gene IndexU005438
Consensus CDS ProjectCCDS19177.1
International Mouse Knockout Project StatusSnx17
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022491 VEGA Gene Model | MGI Sequence Detail 5674 C57BL/6J ±  kb
transcript OTTMUST00000053836 VEGA | MGI Sequence Detail 2018 Not Applicable 
polypeptide OTTMUSP00000025620 VEGA | MGI Sequence Detail 470 Not Applicable 

For the selected sequences
All sequences(62) RefSeq(4) UniProt(5)
Polymorphisms SNPs within 2kb(26 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019749 Band 4.1 domain
InterPro IPR000299 FERM domain
InterPro IPR001683 Phox homologous domain
InterPro IPR000159 Ras-association
Protein Ontology PR:000015366 sorting nexin-17
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:194542 Ghai R, et al., Structural basis for endosomal trafficking of diverse transmembrane cargos by PX-FERM proteins. Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):E643-52
All references(40)
Other
accession IDs
MGI:1098612, MGI:1923317, MGI:2140966, MGI:5489919

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory