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Arcn1
Gene Detail
Symbol

Name
ID
Arcn1
archain 1
MGI:2387591
Synonyms
4632432M07Rik, nur17, pale coat neuro
Feature Type
protein coding gene
Genetic Map
Chromosome 9
24.84 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr9:44741564-44767845 bp, - strand
From VEGA annotation of GRCm38

  26282 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1250  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: ARCN1
Gene Tree: Arcn1

Human
homologs
ARCN1, archain 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 372
neXtProt AC: NX_P48444

Human Synonyms: COPD

Human Chr (Location): 11q23.3; chr11:118572387-118603033 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(18) : Chemically induced (ENU)(1) Gene trapped(15) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a spontaneous mutation have a dilute coat color and neurological defects.
 
Interactions
Arcn1 interacts with 313 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (24 annotations)
Process adult locomotory behavior, cerebellar Purkinje cell layer maturation, ...
Component cell, clathrin adaptor complex, ...
Function poly(A) RNA binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (26)    Tissues (17)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 26
cDNA source data(12)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase arcn1 ; ZFIN arcn1b    NEW 
Molecular
reagents
All nucleic(12) cDNA(12)
Microarray probesets(8)
Other database
links
VEGA Gene Model OTTMUSG00000030776 (Evidence)
Ensembl Gene Model ENSMUSG00000032096 (Evidence)
Entrez Gene 213827 (Evidence)
DFCI TC1623351, TC1587201, TC1586556, TC1573180
DoTS DT.87027718, DT.535423, DT.526112, DT.101350851, DT.110549427, DT.91391373
NIA Mouse Gene Index U355867, U030782, U128588
Consensus CDS Project CCDS40602.1
International Mouse Phenotyping Consortium Status Arcn1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030776 VEGA Gene Model | MGI Sequence Detail 26282 C57BL/6J ±  kb
transcript OTTMUST00000076178 VEGA | MGI Sequence Detail 4072 Not Applicable 
polypeptide OTTMUSP00000040065 VEGA | MGI Sequence Detail 511 Not Applicable 

For the selected sequences
All sequences(59) RefSeq(2) UniProt(5)
Polymorphisms
SNPs within 2kb(149 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR022775 AP complex, mu/sigma subunit
InterPro IPR008968 Clathrin adaptor, mu subunit, C-terminal
InterPro IPR027059 Coatomer delta subunit
InterPro IPR011012 Longin-like domain
Protein Ontology PR:000004197 coatomer subunit delta
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(34)
Other
accession IDs
MGI:2444478, MGI:2671478

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory