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Yrdc Gene Detail
Summary
  • Symbol
    Yrdc
  • Name
    yrdC domain containing (E.coli)
  • Synonyms
    IRIP, MGC:38336
  • Feature Type
    protein coding gene
  • IDs
    MGI:2387201
    NCBI Gene: 230734
Location & Maps
more
  • Sequence Map
    Chr4:124850679-124855242 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      4564 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 57.92 cM, cytoband D2.2
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    YRDC, yrdC N6-threonylcarbamoyltransferase domain containing
  • Vertebrate Orthologs
    10
  • Human Ortholog
    YRDC, yrdC N6-threonylcarbamoyltransferase domain containing
    Orthology source: HGNC, HomoloGene
  • Synonyms
    DRIP3, IRIP, SUA5
  • Links
    NCBI Gene ID: 79693
    neXtProt AC: NX_Q86U90

  • Chr Location
    1p34.3; chr1:37802942-37808193 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    2
  • Gene trapped
    3
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Yrdc
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009199 VEGA Gene Model | MGI Sequence Detail 4564 C57BL/6J ±  kb
transcript OTTMUST00000020813 VEGA | MGI Sequence Detail 1634 Not Applicable  
polypeptide OTTMUSP00000009544 VEGA | MGI Sequence Detail 280 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    26 from dbSNP Build 142
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000017547 YrdC domain-containing protein, mitochondrial
  • InterPro Domains
    IPR017945 DHBP synthase RibB-like alpha/beta domain
    IPR006070 YrdC-like domain
Molecular
Reagents
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  • All nucleic 35
    cDNA 35

    Microarray probesets 3
Other
Accession IDs
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MGI:2140539
References
more
  • Summaries
    All 30
    Gene Ontology 4
    Phenotypes 11
  • Earliest
    J:10021 Lai E, et al., Physical maps of the mouse and human immunoglobulin-like loci. Adv Immunol. 1989;46:1-59
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory