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Zcchc6 Gene Detail
Summary
  • Symbol
    Zcchc6
  • Name
    zinc finger, CCHC domain containing 6
  • Synonyms
    6030448M23Rik, MGC:38585
  • Feature Type
    protein coding gene
  • IDs
    MGI:2387179
    NCBI Gene: 214290
  • Gene Overview
    MyGene.info: ZCCHC6
Location & Maps
more
  • Sequence Map
    Chr13:59771879-59823147 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      51269 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 31.88 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    ZCCHC6, zinc finger CCHC-type containing 6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ZCCHC6, zinc finger CCHC-type containing 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PAPD6, TUT7
  • Links
    NCBI Gene ID: 79670
    neXtProt AC: NX_Q5VYS8

  • Chr Location
    9q21; chr9:86287733-86354501 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Gene trapped
    6
  • Genomic Mutations
    1 involving Zcchc6
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035248 Ensembl Gene Model | MGI Sequence Detail 51269 C57BL/6J ±  kb
transcript ENSMUST00000071703 Ensembl | MGI Sequence Detail 5551 Not Applicable  
polypeptide ENSMUSP00000071623 Ensembl | MGI Sequence Detail 1474 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    461 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 18
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:2145163
References
more
  • Summaries
    All 33
    Developmental Gene Expression 5
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/27/2016
MGI 6.05
The Jackson Laboratory