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Csmd2 Gene Detail
Summary
  • Symbol
    Csmd2
  • Name
    CUB and Sushi multiple domains 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2386401
    NCBI Gene: 329942
  • Gene Overview
    MyGene.info: CSMD2
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:127987857-128567656 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 61.65 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    5695 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2386401
protein coding gene Chr4:127987775-128567660 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028801
protein coding gene Chr4:129778664-130373684 (+)
A/J MGP_AJ_G0028760
protein coding gene Chr4:124654620-125228190 (+)
AKR/J MGP_AKRJ_G0028713
protein coding gene Chr4:128090664-128686684 (+)
BALB/cJ MGP_BALBcJ_G0028783
protein coding gene Chr4:125223381-125805132 (+)
C3H/HeJ MGP_C3HHeJ_G0028497
protein coding gene Chr4:128147689-128742483 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029225
protein coding gene Chr4:134706663-135321707 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026498
protein coding gene Chr4:117773822-118351372 (+)
CAST/EiJ MGP_CASTEiJ_G0027930
protein coding gene Chr4:126300481-126912701 (+)
CBA/J MGP_CBAJ_G0028463
protein coding gene Chr4:137983685-138609209 (+)
DBA/2J MGP_DBA2J_G0028612
protein coding gene Chr4:125087947-125662015 (+)
FVB/NJ MGP_FVBNJ_G0028579
protein coding gene Chr4:123781593-124404297 (+)
LP/J MGP_LPJ_G0028713
protein coding gene Chr4:130069990-130678029 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028605
protein coding gene Chr4:142950548-143557023 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029263
protein coding gene Chr4:128459028-129060421 (+)
PWK/PhJ MGP_PWKPhJ_G0027651
protein coding gene Chr4:121625023-122215188 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027478
protein coding gene Chr4:124312699-124912977 (+)
WSB/EiJ MGP_WSBEiJ_G0028010
protein coding gene Chr4:128558562-129164623 (+)



Homology
more
  • Human Ortholog
    CSMD2, CUB and Sushi multiple domains 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CSMD2, CUB and Sushi multiple domains 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ1007G16.1, dJ1007G16.2, dJ947L8.1
  • Links
    NCBI Gene ID: 114784
    neXtProt AC: NX_Q7Z408
    UniProt: Q7Z408

  • Chr Location
    1p35.1; chr1:33513999-34165842 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028804 Ensembl Gene Model | MGI Sequence Detail 579800 C57BL/6J ±  kb
transcript ENSMUST00000184063 Ensembl | MGI Sequence Detail 13555 Not Applicable  
polypeptide ENSMUSP00000138958 Ensembl | MGI Sequence Detail 3611 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 4
References
more
  • Summaries
    All 22
    Developmental Gene Expression 2
    Phenotypes 6
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory