Bcas3
Gene Detail

Symbol Name ID

Bcas3 breast carcinoma amplified sequence 3 MGI:2385848

Synonyms

1500019F07Rik, 2610028P08Rik, K20D4, rudhira

Feature Type

protein coding gene

Genetic Map

Chromosome 11

51.34 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr11:85353167-85826058 bp, + strand From VEGA annotation of GRCm38   472892 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:9778  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Bcas3

Human homologs

Human Homolog		BCAS3, breast carcinoma amplified sequence 3
NCBI Gene ID		54828
neXtProt AC		NX_Q9H6U6
Human Synonyms		GAOB1, MAAB
Human Chr (Location)		17q23; chr17:60677811-61392838 (+)  GRCh38

Alleles and phenotypes

All alleles(51) : Gene trapped(51)
Incidental mutations (data from Mutagenetix , APF )

Gene Ontology (GO) classifications

All GO classifications: (3 annotations)

Component

cell periphery, cytoplasm, ...

External Resources: FuncBase

Expression

Literature Summary: (1 records)

Data Summary: Results (83)    Tissues (37)    Images (30)
Theiler Stages: 9, 11, 12, 13, 15, 17, 19, 20, 28

Assay Type	Results
Immunohistochemistry	18
RNA in situ	29
RT-PCR	36

cDNA source data(96)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(98) cDNA(96) Primer pair(2)
Microarray probesets(6)

Other database links

VEGA Gene Model	OTTMUSG00000001026 (Evidence)
Ensembl Gene Model	ENSMUSG00000059439 (Evidence)
Entrez Gene	192197 (Evidence)
UniGene	287663
DFCI	TC1575651, TC1591659, TC1599600, TC1630610, TC1630934, TC1639324, TC1686574
DoTS	DT.101366697, DT.101400029, DT.110519137, DT.40136642, DT.40145677, DT.524620, DT.530548, DT.94290885
NIA Mouse Gene Index	U013121
Consensus CDS Project	CCDS25195.1, CCDS48873.1
International Mouse Knockout Project Status	Bcas3

Sequences

Length	Strain/Species
genomic	OTTMUSG00000001026	VEGA Gene Model | MGI Sequence Detail	472892	C57BL/6J
transcript	OTTMUST00000002042	VEGA | MGI Sequence Detail	3810	Not Applicable
polypeptide	OTTMUSP00000000985	VEGA | MGI Sequence Detail	943	Not Applicable

All sequences(129) RefSeq(21) UniProt(10)

Polymorphisms

SNPs within 2kb(2433 from dbSNP Build 137)

Protein-related information

Resource	ID	Description
InterPro	IPR022175	Breast carcinoma amplified sequence 3
InterPro	IPR001680	WD40 repeat
InterPro	IPR017986	WD40-repeat-containing domain
InterPro	IPR015943	WD40/YVTN repeat-like-containing domain
Protein Ontology	PR:000004680	breast carcinoma-amplified sequence 3

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)

Other accession IDs

MGI:1917451, MGI:1923594, MGI:2144406