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Ly6g5b Gene Detail
Summary
  • Symbol
    Ly6g5b
  • Name
    lymphocyte antigen 6 complex, locus G5B
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385809
    NCBI Gene: 266614
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:35113948-35115428 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 18.59 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385809
protein coding gene Chr17:35113944-35118558 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023618
protein coding gene Chr17:35255116-35256596 (-)
A/J MGP_AJ_G0023578
protein coding gene Chr17:34087612-34089094 (-)
AKR/J MGP_AKRJ_G0023546
protein coding gene Chr17:34562454-34563936 (-)
BALB/cJ MGP_BALBcJ_G0023584
protein coding gene Chr17:34226277-34227758 (-)
C3H/HeJ MGP_C3HHeJ_G0023345
protein coding gene Chr17:34962354-34963836 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024023
protein coding gene Chr17:36594769-36596249 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021504
protein coding gene Chr17:31855892-31857374 (-)
CAST/EiJ MGP_CASTEiJ_G0022841
protein coding gene Chr17:34959643-34961124 (-)
CBA/J MGP_CBAJ_G0023323
protein coding gene Chr17:38098015-38099497 (-)
DBA/2J MGP_DBA2J_G0023451
protein coding gene Chr17:33411363-33412844 (-)
FVB/NJ MGP_FVBNJ_G0023418
protein coding gene Chr17:33249304-33250784 (-)
LP/J MGP_LPJ_G0023528
protein coding gene Chr17:35583084-35584564 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023440
protein coding gene Chr17:37035982-37037462 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024068
protein coding gene Chr17:34782600-34784081 (-)
PWK/PhJ MGP_PWKPhJ_G0022589
protein coding gene Chr17:32244547-32246031 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022409
protein coding gene Chr17:32797148-32798631 (-)
WSB/EiJ MGP_WSBEiJ_G0022905
protein coding gene Chr17:34902436-34903920 (-)



Homology
more
  • Human Ortholog
    LY6G5B, lymphocyte antigen 6 family member G5B
  • Vertebrate Orthologs
    5
  • Human Ortholog
    LY6G5B, lymphocyte antigen 6 family member G5B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf19, G5b
  • Links
    NCBI Gene ID: 58496
    neXtProt AC: NX_Q8NDX9
    UniProt: Q8NDX9

  • Chr Location
    6p21.33; chr6:31670951-31672450 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000043807 Ensembl Gene Model | MGI Sequence Detail 1481 C57BL/6J ±  kb
transcript ENSMUST00000062657 Ensembl | MGI Sequence Detail 1046 Not Applicable  
polypeptide ENSMUSP00000052133 Ensembl | MGI Sequence Detail 194 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 6
    Primer pair 2

    Microarray probesets 1
References
more
  • Summaries
    All 18
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 1
  • Earliest
    J:78657 Mallya M, et al., Transcriptional Analysis of a Novel Cluster of LY-6 Family Members in the Human and Mouse Major Histocompatibility Complex: Five Genes with Many Splice Forms. Genomics. 2002 Jul;80(1):113-23
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/18/2020
MGI 6.14
The Jackson Laboratory