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Ms4a6c Gene Detail
Summary
  • Symbol
    Ms4a6c
  • Name
    membrane-spanning 4-domains, subfamily A, member 6C
  • Synonyms
    2200009H22Rik, 2210417N07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385644
    NCBI Gene: 73656
  • Member of
    Ms4ac cluster
Location & Maps
more
  • Sequence Map
    Chr19:11469366-11482192 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      12827 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 8.44 cM, cytoband B
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    MS4A6A, membrane spanning 4-domains A6A
  • Vertebrate Orthologs
    2
  • Human Ortholog
    MS4A6A, membrane spanning 4-domains A6A
    Orthology source: HGNC
  • Synonyms
    4SPAN3, 4SPAN3.2, CD20L3, CDA01, MS4A6, MST090, MSTP090
  • Links
    NCBI Gene ID: 64231
    neXtProt AC: NX_Q9H2W1

  • Chr Location
    11q12.1; chr11:60171607-60184666 (-)  GRCh38.p2

  • Human Ortholog
    MS4A6E, membrane spanning 4-domains A6E
    Orthology source: HGNC
  • Links
    NCBI Gene ID: 245802
    neXtProt AC: NX_Q96DS6

  • Chr Location
    11q12.2; chr11:60334882-60340968 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000047127 VEGA Gene Model | MGI Sequence Detail 12827 C57BL/6J ±  kb
transcript OTTMUST00000121947 VEGA | MGI Sequence Detail 1841 Not Applicable  
polypeptide OTTMUSP00000067034 VEGA | MGI Sequence Detail 217 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    147 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000010921 membrane-spanning 4-domains subfamily A member 6C
  • InterPro Domains
    IPR007237 CD20-like family
    IPR030417 Membrane-spanning 4-domains subfamily A
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 3
Other
Accession IDs
less
MGI:1920906, MGI:1925737
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/13/2016
MGI 6.05
The Jackson Laboratory