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Slu7 Gene Detail
Summary
  • Symbol
    Slu7
  • Name
    SLU7 splicing factor homolog (S. cerevisiae)
  • Synonyms
    D11Ertd730e, D3Bwg0878e, MGC:31026
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385598
    NCBI Gene: 193116
  • Gene Overview
    MyGene.info: SLU7
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:43433744-43447981 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 25.68 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    165 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385598
protein coding gene Chr11:43433723-43447982 (.)
129S1/SvImJ MGP_129S1SvImJ_G0018172
protein coding gene Chr11:42195442-42209634 (+)
A/J MGP_AJ_G0018144
protein coding gene Chr11:40590003-40604240 (+)
AKR/J MGP_AKRJ_G0018108
protein coding gene Chr11:41776181-41792035 (+)
BALB/cJ MGP_BALBcJ_G0018113
protein coding gene Chr11:40773808-40788571 (+)
C3H/HeJ MGP_C3HHeJ_G0017926
protein coding gene Chr11:41810197-41825256 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018567
protein coding gene Chr11:43493933-43508167 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016222
protein coding gene Chr11:38658235-38673264 (+)
CAST/EiJ MGP_CASTEiJ_G0017490
protein coding gene Chr11:41862895-41877920 (+)
CBA/J MGP_CBAJ_G0017899
protein coding gene Chr11:45493020-45508732 (+)
DBA/2J MGP_DBA2J_G0018009
protein coding gene Chr11:40377133-40391529 (+)
FVB/NJ MGP_FVBNJ_G0018003
protein coding gene Chr11:40066013-40080316 (+)
LP/J MGP_LPJ_G0018081
protein coding gene Chr11:42445441-42459690 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018027
protein coding gene Chr11:47143405-47157651 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018606
protein coding gene Chr11:41931215-41947030 (+)
PWK/PhJ MGP_PWKPhJ_G0017271
protein coding gene Chr11:40396829-40411733 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017063
protein coding gene Chr11:41723954-41742298 (+)
WSB/EiJ MGP_WSBEiJ_G0017539
protein coding gene Chr11:41573214-41587564 (+)



Homology
more
  • Human Ortholog
    SLU7, SLU7 homolog, splicing factor
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLU7, SLU7 homolog, splicing factor
    Orthology source: HomoloGene, HGNC
  • Synonyms
    9G8, hSlu7
  • Links
    NCBI Gene ID: 10569
    neXtProt AC: NX_O95391
    UniProt: O95391

  • Chr Location
    5q33.3; chr5:160401641-160419161 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4690
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SLU7
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000020409 Ensembl Gene Model | MGI Sequence Detail 14238 C57BL/6J ±  kb
    transcript ENSMUST00000020681 Ensembl | MGI Sequence Detail 3625 Not Applicable  
    polypeptide ENSMUSP00000020681 Ensembl | MGI Sequence Detail 585 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 120
      cDNA 117
      Primer pair 3

      Microarray probesets 11
    Other
    Accession IDs
    less
    MGD-MRK-34222, MGI:106528, MGI:1289335, MGI:2144386
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 2
      Gene Ontology 4
      Phenotypes 10
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:213437 Storbeck M, et al., Neuronal-specific deficiency of the splicing factor Tra2b causes apoptosis in neurogenic areas of the developing mouse brain. PLoS One. 2014;9(2):e89020

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory