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Pgap2
Gene Detail
Symbol

Name
ID
Pgap2
post-GPI attachment to proteins 2
MGI:2385286
Synonyms
1810006G21Rik, Frag1
Feature Type
protein coding gene
Genetic Map
Chromosome 7
54.71 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr7:102210208-102238567 bp, + strand
From VEGA annotation of GRCm38

  28360 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:137653  Vertebrate Homology Class
1 mouse; 1 rat

HCOP human homology predictions: PGAP2
Gene Tree: Pgap2

Human
homologs
PGAP2, post-GPI attachment to proteins 2
Orthology source: HGNC

IDs:
NCBI Gene ID: 27315
neXtProt AC: NX_Q9UHJ9

Human Synonyms: CWH43-N, FRAG1, HPMRS3, MRT17, MRT21

Human Chr (Location): 11p15.5; chr11:3797724-3826371 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human PGAP2

Mutations,
alleles, and
phenotypes
All mutations/alleles(13) : Gene trapped(9) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Pgap2 interacts with 148 markers (Mir1b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (27)    Tissues (8)    Images (12)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 27
cDNA source data(86)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase pgap2 ; ZFIN pgap2    NEW 
Molecular
reagents
All nucleic(86) cDNA(86)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000030548 (Evidence)
Ensembl Gene Model ENSMUSG00000030990 (Evidence)
Entrez Gene 233575 (Evidence)
UniGene 302013
DFCI TC1581459, TC1619673, TC1678039, TC1683042, TC1753141
NIA Mouse Gene Index U042848
Consensus CDS Project CCDS40048.1
International Mouse Phenotyping Consortium Status Pgap2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030548 VEGA Gene Model | MGI Sequence Detail 28360 C57BL/6J ±  kb
transcript OTTMUST00000075620 VEGA | MGI Sequence Detail 1201 Not Applicable 
polypeptide OTTMUSP00000039684 VEGA | MGI Sequence Detail 254 Not Applicable 

For the selected sequences
All sequences(162) RefSeq(30) UniProt(14)
Polymorphisms
SNPs within 2kb(350 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019402 Frag1/DRAM/Sfk1
Protein Ontology PR:000012595 post-GPI attachment to proteins factor 2
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1925618, MGI:2142307

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory