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Pgap2
Gene Detail
Symbol

Name
ID
Pgap2
post-GPI attachment to proteins 2
MGI:2385286
Synonyms
1810006G21Rik, Frag1
Feature Type
protein coding gene
Genetic Map
Chromosome 7
54.71 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr7:102210208-102238567 bp, + strand
From VEGA annotation of GRCm38

  28360 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:137653  Vertebrate Homology Class
1 mouse; 1 rat

Gene Tree: Pgap2

Mutations,
alleles, and
phenotypes
All mutations/alleles(12) : Gene trapped(9) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Pgap2 interacts with 148 markers (Mir1b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (27)    Tissues (8)    Images (12)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 27
cDNA source data(86)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(86) cDNA(86)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000030548 (Evidence)
Ensembl Gene ModelENSMUSG00000030990 (Evidence)
Entrez Gene233575 (Evidence)
UniGene302013
DFCITC1581459, TC1753141, TC1683042, TC1678039, TC1619673
NIA Mouse Gene IndexU042848
Consensus CDS ProjectCCDS40048.1
International Mouse Knockout Project StatusPgap2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030548 VEGA Gene Model | MGI Sequence Detail 28360 C57BL/6J ±  kb
transcript OTTMUST00000075620 VEGA | MGI Sequence Detail 1201 Not Applicable 
polypeptide OTTMUSP00000039684 VEGA | MGI Sequence Detail 254 Not Applicable 

For the selected sequences
All sequences(169) RefSeq(26) UniProt(26)
Polymorphisms
SNPs within 2kb(350 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019402 Frag1/DRAM/Sfk1
Protein Ontology PR:000012595 post-GPI attachment to proteins factor 2
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1925618, MGI:2142307

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory