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Slc35c2
Gene Detail
Symbol

Name
ID
Slc35c2
solute carrier family 35, member C2
MGI:2385166
Synonyms
CGI-15, D2Wsu58e, MGC:18664, Ovcov1
Feature Type
protein coding gene
Genetic Map
Chromosome 2
85.53 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr2:165276554-165287869 bp, - strand
From VEGA annotation of GRCm38

  11316 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:6581  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: SLC35C2
Gene Tree: Slc35c2

Human
homologs
SLC35C2, solute carrier family 35 (GDP-fucose transporter), member C2
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 51006
neXtProt AC: NX_Q9NQQ7

Human Synonyms: BA394O2.1, C20orf5, CGI-15, OVCOV1

Human Chr (Location): 20q13.12; chr20:46349528-46364458 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(3) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Slc35c2 interacts with 204 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process anion transmembrane transport, fucosylation, ...
Component cis-Golgi network, endoplasmic reticulum-Golgi intermediate compartment, ...
Function antiporter activity
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (148)    Tissues (129)    Images (20)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 138
Northern blot 4
RT-PCR 6
cDNA source data(12)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc35c2    NEW 
Molecular
reagents
All nucleic(14) cDNA(12) Primer pair(2)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000001172 (Evidence)
Ensembl Gene Model ENSMUSG00000017664 (Evidence)
Entrez Gene 228875 (Evidence)
DFCI TC1593407, TC1575360, TC1613916, TC1685366
DoTS DT.101219008, DT.101388991, DT.101181159, DT.99856607, DT.94365094, DT.493438, DT.94365086
NIA Mouse Gene Index U023658
Consensus CDS Project CCDS17074.1
International Mouse Phenotyping Consortium Status Slc35c2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000001172 VEGA Gene Model | MGI Sequence Detail 11316 C57BL/6J ±  kb
transcript OTTMUST00000002296 VEGA | MGI Sequence Detail 1843 Not Applicable 
polypeptide OTTMUSP00000001127 VEGA | MGI Sequence Detail 364 Not Applicable 

For the selected sequences
All sequences(129) RefSeq(23) UniProt(11)
Polymorphisms
SNPs within 2kb(109 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004853 Domain of unknown function DUF250
InterPro IPR013657 UAA transporter
Protein Ontology PR:000015097 solute carrier family 35 member C2
References
(Earliest) J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)
Other
accession IDs
MGD-MRK-34239, MGI:106545, MGI:2139522

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory