Slc35c2
Gene Detail

Symbol Name ID

Slc35c2 solute carrier family 35, member C2 MGI:2385166

Synonyms

CGI-15, D2Wsu58e, MGC:18664, Ovcov1

Feature Type

protein coding gene

Genetic Map

Chromosome 2

85.53 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr2:165276554-165287869 bp, - strand From VEGA annotation of GRCm38   11316 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:6581  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Slc35c2

Human homologs

Human Homolog		SLC35C2, solute carrier family 35 (GDP-fucose transporter), member C2
NCBI Gene ID		51006
neXtProt AC		NX_Q9NQQ7
Human Synonyms		BA394O2.1, C20orf5, CGI-15, OVCOV1
Human Chr (Location)		20q13.12; chr20:46347350-46364458 (-)  GRCh38

Alleles and phenotypes

All alleles(5) : Gene trapped(3) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )

Gene Ontology (GO) classifications

All GO classifications: (11 annotations)

Process	fucosylation, negative regulation of gene expression, ...
Component	cis-Golgi network, endoplasmic reticulum-Golgi intermediate compartment, ...
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (5 records)

Data Summary: Results (148)    Tissues (129)    Images (20)
Theiler Stages: 10, 11, 18, 19, 22, 23, 25, 28

Assay Type	Results
RNA in situ	138
Northern blot	4
RT-PCR	6

cDNA source data(12)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(14) cDNA(12) Primer pair(2)
Microarray probesets(6)

Other database links

VEGA Gene Model	OTTMUSG00000001172 (Evidence)
Ensembl Gene Model	ENSMUSG00000017664 (Evidence)
Entrez Gene	228875 (Evidence)
DFCI	TC1575360, TC1593407, TC1613916, TC1685366
DoTS	DT.101181159, DT.101219008, DT.101388991, DT.493438, DT.94365086, DT.94365094, DT.99856607
NIA Mouse Gene Index	U023658
Consensus CDS Project	CCDS17074.1
International Mouse Knockout Project Status	Slc35c2

Sequences

Length	Strain/Species
genomic	OTTMUSG00000001172	VEGA Gene Model | MGI Sequence Detail	11316	C57BL/6J
transcript	OTTMUST00000040009	VEGA | MGI Sequence Detail	2008	Not Applicable
polypeptide	OTTMUSP00000017848	VEGA | MGI Sequence Detail	364	Not Applicable

All sequences(129) RefSeq(23) UniProt(11)

Polymorphisms

SNPs within 2kb(109 from dbSNP Build 137)

Protein-related information

Resource	ID	Description
InterPro	IPR004853	Domain of unknown function DUF250
InterPro	IPR013657	UAA transporter
Protein Ontology	PR:000015097	solute carrier family 35 member C2

References

(Earliest) J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(39)

Other accession IDs

MGD-MRK-34239, MGI:106545, MGI:2139522