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Slc35c2 Gene Detail
Summary
  • Symbol
    Slc35c2
  • Name
    solute carrier family 35, member C2
  • Synonyms
    CGI-15, D2Wsu58e, MGC:18664, Ovcov1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385166
    NCBI Gene: 228875
  • Gene Overview
    MyGene.info: SLC35C2
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:165276554-165287869 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 85.53 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    109 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385166
protein coding gene Chr2:165276522-165287888 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026889
protein coding gene Chr2:170826068-170838518 (-)
A/J MGP_AJ_G0026856
protein coding gene Chr2:163824455-163838120 (-)
AKR/J MGP_AKRJ_G0026827
protein coding gene Chr2:168706383-168717706 (-)
BALB/cJ MGP_BALBcJ_G0026865
protein coding gene Chr2:164190376-164202209 (-)
C3H/HeJ MGP_C3HHeJ_G0026607
protein coding gene Chr2:169064960-169076983 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027312
protein coding gene Chr2:175769638-175780791 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024683
protein coding gene Chr2:157226751-157238059 (-)
CAST/EiJ MGP_CASTEiJ_G0026065
protein coding gene Chr2:169490664-169503850 (-)
CBA/J MGP_CBAJ_G0026584
protein coding gene Chr2:182166332-182177656 (-)
DBA/2J MGP_DBA2J_G0026722
protein coding gene Chr2:162985233-162996532 (-)
FVB/NJ MGP_FVBNJ_G0026688
protein coding gene Chr2:161427784-161439051 (-)
LP/J MGP_LPJ_G0026824
protein coding gene Chr2:170877382-170888666 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026707
protein coding gene Chr2:185677958-185689229 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027369
protein coding gene Chr2:168603785-168615109 (-)
PWK/PhJ MGP_PWKPhJ_G0025802
protein coding gene Chr2:162594843-162606400 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025603
protein coding gene Chr2:167519553-167530719 (-)
WSB/EiJ MGP_WSBEiJ_G0026138
protein coding gene Chr2:169500318-169511625 (-)



Homology
more
  • Human Ortholog
    SLC35C2, solute carrier family 35 member C2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SLC35C2, solute carrier family 35 member C2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BA394O2.1, C20orf5, CGI-15, OVCOV1
  • Links
    NCBI Gene ID: 51006
    neXtProt AC: NX_Q9NQQ7
    UniProt: Q9NQQ7

  • Chr Location
    20q13.12; chr20:46349528-46364461 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000017664 Ensembl Gene Model | MGI Sequence Detail 11316 C57BL/6J ±  kb
transcript ENSMUST00000017808 Ensembl | MGI Sequence Detail 1843 Not Applicable  
polypeptide ENSMUSP00000017808 Ensembl | MGI Sequence Detail 364 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 14
    Primer pair 2

    Microarray probesets 6
Other
Accession IDs
less
MGD-MRK-34239, MGI:106545, MGI:2139522
References
more
  • Summaries
    All 37
    Developmental Gene Expression 5
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory