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BC005624 Gene Detail
Summary
  • Symbol
    BC005624
  • Name
    cDNA sequence BC005624
  • Synonyms
    MGC:11690
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385132
    NCBI Gene: 227707
  • Gene Overview
    MyGene.info: C9orf78
Location & Maps
more
  • Sequence Map
    Chr2:30972177-30982201 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      10025 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 21.77 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    C9orf78, chromosome 9 open reading frame 78
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C9orf78, chromosome 9 open reading frame 78
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA409K20.3, HCA59, HSPC220
  • Links
    NCBI Gene ID: 51759
    neXtProt AC: NX_Q9NZ63

  • Chr Location
    9q34.11; chr9:129827285-129835293 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000011874 VEGA Gene Model | MGI Sequence Detail 10025 C57BL/6J ±  kb
transcript OTTMUST00000027978 VEGA | MGI Sequence Detail 1984 Not Applicable  
polypeptide OTTMUSP00000012696 VEGA | MGI Sequence Detail 289 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    39 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR010756 Hepatocellular carcinoma-associated antigen 59
Molecular
Reagents
less
  • All nucleic 49
    cDNA 49

    Microarray probesets 4
References
more
  • Summaries
    All 22
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/27/2016
MGI 6.05
The Jackson Laboratory