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BC005624 Gene Detail
Summary
  • Symbol
    BC005624
  • Name
    cDNA sequence BC005624
  • Synonyms
    MGC:11690
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385132
    NCBI Gene: 227707
  • Gene Overview
    MyGene.info: C9orf78
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:30972177-30982201 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 21.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    39 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385132
protein coding gene Chr2:30970693-30982201 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025579
protein coding gene Chr2:29269430-29281217 (-)
A/J MGP_AJ_G0025557
protein coding gene Chr2:28079318-28090020 (-)
AKR/J MGP_AKRJ_G0025526
protein coding gene Chr2:29039828-29048766 (-)
BALB/cJ MGP_BALBcJ_G0025553
protein coding gene Chr2:28214708-28225816 (-)
C3H/HeJ MGP_C3HHeJ_G0025314
protein coding gene Chr2:28967730-28980305 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025998
protein coding gene Chr2:30216284-30226049 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023406
protein coding gene Chr2:26843570-26853787 (-)
CAST/EiJ MGP_CASTEiJ_G0024776
protein coding gene Chr2:28903904-28913885 (-)
CBA/J MGP_CBAJ_G0025291
protein coding gene Chr2:31290846-31304027 (-)
DBA/2J MGP_DBA2J_G0025424
protein coding gene Chr2:27858342-27867500 (-)
FVB/NJ MGP_FVBNJ_G0025387
protein coding gene Chr2:27697814-27709886 (-)
LP/J MGP_LPJ_G0025510
protein coding gene Chr2:29176936-29188026 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025417
protein coding gene Chr2:31070268-31086907 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026056
protein coding gene Chr2:28948566-28961288 (-)
PWK/PhJ MGP_PWKPhJ_G0024523
protein coding gene Chr2:27731152-27741808 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024323
protein coding gene Chr2:29093802-29103226 (-)
WSB/EiJ MGP_WSBEiJ_G0024844
protein coding gene Chr2:29124856-29137057 (-)



Homology
more
  • Human Ortholog
    C9orf78, chromosome 9 open reading frame 78
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C9orf78, chromosome 9 open reading frame 78
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA409K20.3, CSU2, HCA59, HSPC220
  • Links
    NCBI Gene ID: 51759
    neXtProt AC: NX_Q9NZ63
    UniProt: Q9NZ63

  • Chr Location
    9q34.11; chr9:129827285-129835293 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026851 Ensembl Gene Model | MGI Sequence Detail 10025 C57BL/6J ±  kb
transcript ENSMUST00000028205 Ensembl | MGI Sequence Detail 1984 Not Applicable  
polypeptide ENSMUSP00000028205 Ensembl | MGI Sequence Detail 289 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR010756 Telomere length and silencing protein 1
Molecular
Reagents
less
  • All nucleic 50
    cDNA 50

    Microarray probesets 4
References
more
  • Summaries
    All 24
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory