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Rprd1a Gene Detail
Summary
  • Symbol
    Rprd1a
  • Name
    regulation of nuclear pre-mRNA domain containing 1A
  • Synonyms
    MGC:29396, MGC:36325
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385066
    NCBI Gene: 225283
Location & Maps
more
  • Sequence Map
    Chr18:24484962-24530204 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      45243 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 13.18 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    RPRD1A, regulation of nuclear pre-mRNA domain containing 1A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPRD1A, regulation of nuclear pre-mRNA domain containing 1A
    Orthology source: HGNC, HomoloGene
  • Synonyms
    HsT3101, P15RS
  • Links
    NCBI Gene ID: 55197
    neXtProt AC: NX_Q96P16

  • Chr Location
    18q12.2; chr18:35989824-36067594 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    94
  • Gene trapped
    92
  • Targeted
    2
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040446 Ensembl Gene Model | MGI Sequence Detail 45243 C57BL/6J ±  kb
transcript ENSMUST00000046206 Ensembl | MGI Sequence Detail 4297 Not Applicable  
polypeptide ENSMUSP00000043618 Ensembl | MGI Sequence Detail 312 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    148 from dbSNP Build 142
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000014248 regulation of nuclear pre-mRNA domain-containing protein 1A
  • InterPro Domains
    IPR032337 Cell-cycle alteration and expression-elevated protein in tumour
    IPR006569 CID domain
    IPR008942 ENTH/VHS
    IPR006903 RNA polymerase II-binding domain
Molecular
Reagents
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  • All nucleic 9
    cDNA 9

    Microarray probesets 3
Other
Accession IDs
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MGI:2147399
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory