BC006965 Gene Detail

Summary

• Symbol
  BC006965
• Name
  cDNA sequence BC006965
• Synonyms
  MGC:6956, MGC:6983

• Feature Type
  lncRNA gene
• IDs
  MGI:2384955
  NCBI Gene: 217294
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:112554753-112602182 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 76.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1779 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2384955	lncRNA gene	Chr11:112554747-112693854 (-)
129S1/SvImJ	ENSMUSG00200033738	lncRNA gene	Chr11:109901144-110020033 (-)
A/J	ENSMUSG00195019277	protein coding gene	Chr11:109627600-109666375 (-)
A/J	ENSMUSG00195022346	lncRNA gene	Chr11:109615938-109736878 (-)
AKR/J	ENSMUSG00220035524	lncRNA gene	Chr11:109735778-109854346 (-)
BALB/cJ	ENSMUSG00180020411	lncRNA gene	Chr11:109923215-110041800 (-)
C3H/HeJ	ENSMUSG00175013106	protein coding gene	Chr11:109879876-109918617 (-)
C3H/HeJ	ENSMUSG00175013480	lncRNA gene	Chr11:109868222-109989101 (-)
C57BL/6NJ	ENSMUSG00215017637	lncRNA gene	Chr11:109399256-109517841 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013353	unclassified non-coding RNA gene	Chr11:108510195-108628318 (-)
CAST/EiJ	ENSTCUG00005041121	lncRNA gene	Chr11:109281202-109402427 (-)
CBA/J	ENSMUSG00210013439	protein coding gene	Chr11:109600218-109638970 (-)
CBA/J	ENSMUSG00210013823	lncRNA gene	Chr11:109588566-109709429 (-)
DBA/2J	ENSMUSG00185021199	lncRNA gene	Chr11:109912047-110030630 (-)
FVB/NJ	ENSMUSG00205040429	lncRNA gene	Chr11:109748644-109867273 (-)
JF1/MsJ	ENSUMUG00000028825	lncRNA gene	Chr11:110167755-110294609 (-)
LP/J	ENSMUSG00230034889	lncRNA gene	Chr11:110973113-111091661 (-)
NOD/ShiLtJ	ENSMUSG00190023350	lncRNA gene	Chr11:109913309-110040197 (-)
NOD/ShiLtJ	ENSMUSG00190020569	protein coding gene	Chr11:109926219-109964023 (-)
NZO/HlLtJ	ENSMUSG00225053770	lncRNA gene	Chr11:113025066-113143971 (-)
PWK/PhJ	ENSLUMG00010016767	lncRNA gene	Chr11:109706677-109827657 (-)
SPRET/EiJ	ENSMSPG00010039755	lncRNA gene	Chr11:110228477-110347779 (-)
WSB/EiJ	ENSIUOG00005018591	lncRNA gene	Chr11:109676629-109795697 (-)

Homology

• Gene Tree
  BC006965
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• Tissues
  41
• cDNA Data
  9
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  114
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000041674 (Evidence)
• NCBI Gene
  217294

Representative Sequences			Length	Strain/Species
genomic	217294	NCBI Gene Model | MGI Sequence Detail	47430	C57BL/6J
transcript	NR_024085	RefSeq | MGI Sequence Detail	1952	C57BL/6
polypeptide	Q3TZB1	UniProt | EBI | MGI Sequence Detail	80	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 6

References

• Summaries
  All 18

  Developmental Gene Expression 2
• Earliest
  J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for BC006965:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr111614	Chr11:112602295-112602305 (-)	-118 bp
Tssr111613	Chr11:112602176-112602193 (-)	-3 bp