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Ginm1 Gene Detail
Summary
  • Symbol
    Ginm1
  • Name
    glycoprotein integral membrane 1
  • Synonyms
    BC013529, MGC:19209
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384905
    NCBI Gene: 215751
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:7643711-7656681 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 2.35 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    158 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384905
 protein coding gene Chr10:7643711-7668588 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016999
 protein coding gene Chr10:4994097-5019069 (-)
A/J MGP_AJ_G0016977
 protein coding gene Chr10:4747409-4772744 (-)
AKR/J MGP_AKRJ_G0016941
 protein coding gene Chr10:4841328-4866271 (-)
BALB/cJ MGP_BALBcJ_G0016935
 protein coding gene Chr10:4719204-4744291 (-)
C3H/HeJ MGP_C3HHeJ_G0016760
 protein coding gene Chr10:4972135-4997245 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017397
 protein coding gene Chr10:5109247-5134103 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015102
 protein coding gene Chr10:4340135-4363921 (-)
CAST/EiJ MGP_CASTEiJ_G0016342
 protein coding gene Chr10:4889444-4914437 (-)
CBA/J MGP_CBAJ_G0016732
 protein coding gene Chr10:5265499-5291036 (-)
DBA/2J MGP_DBA2J_G0016840
 protein coding gene Chr10:4675559-4700792 (-)
FVB/NJ MGP_FVBNJ_G0016835
 protein coding gene Chr10:4622881-4648003 (-)
LP/J MGP_LPJ_G0016915
 protein coding gene Chr10:4837481-4862407 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016865
 protein coding gene Chr10:5220028-5246030 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017435
 protein coding gene Chr10:4793805-4818913 (-)
PWK/PhJ MGP_PWKPhJ_G0016127
 protein coding gene Chr10:4648580-4674197 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015909
 protein coding gene Chr10:4868320-4895392 (-)
WSB/EiJ MGP_WSBEiJ_G0016404
 protein coding gene Chr10:4795129-4820073 (-)



Homology
more
  • Human Ortholog
    GINM1, glycosylated integral membrane protein 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GINM1, glycosylated integral membrane protein 1
  • Synonyms
    C6orf72
  • Links
    NCBI Gene ID: 116254
    neXtProt AC: NX_Q9NU53
    UniProt: Q9NU53

  • Chr Location
    6q25.1; chr6:149566294-149591748 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    752
  • Tissues
    35
  • cDNA Data
    67
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 215751 NCBI Gene Model | MGI Sequence Detail 12971 C57BL/6J ±  kb
    transcript NM_001346750 RefSeq | MGI Sequence Detail 1560 C57BL/6  
    polypeptide Q91WR6 UniProt | EBI | MGI Sequence Detail 327 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 67
      cDNA 67

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2143501
    References
    more
    • Summaries
      All 32
      Developmental Gene Expression 1
      Gene Ontology 1
      Phenotypes 7
    • Earliest
      J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
    • Latest
      J:228563 Koscielny G, et al., The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Res. 2014 Jan;42(Database issue):D802-9
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory