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Casd1 Gene Detail
Summary
  • Symbol
    Casd1
  • Name
    CAS1 domain containing 1
  • Synonyms
    Cast1, MGC:6840
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384865
    NCBI Gene: 213819
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:4600839-4643355 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 1.81 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    30 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384865
protein coding gene Chr6:4600563-4643381 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030428
protein coding gene Chr6:1360649-1407466 (+)
A/J MGP_AJ_G0030401
protein coding gene Chr6:1319600-1362190 (+)
AKR/J MGP_AKRJ_G0030328
protein coding gene Chr6:1370095-1413271 (+)
BALB/cJ MGP_BALBcJ_G0030410
protein coding gene Chr6:1318881-1361547 (+)
C3H/HeJ MGP_C3HHeJ_G0030124
protein coding gene Chr6:1349478-1391876 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030865
protein coding gene Chr6:1403782-1455166 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028076
protein coding gene Chr6:1078924-1123246 (+)
CAST/EiJ MGP_CASTEiJ_G0029525
protein coding gene Chr6:1330251-1377651 (+)
CBA/J MGP_CBAJ_G0030102
protein coding gene Chr6:1439956-1482585 (+)
DBA/2J MGP_DBA2J_G0030246
protein coding gene Chr6:1298153-1340432 (+)
FVB/NJ MGP_FVBNJ_G0030200
protein coding gene Chr6:1306854-1348967 (+)
LP/J MGP_LPJ_G0030333
protein coding gene Chr6:1350936-1396244 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030236
protein coding gene Chr6:1546121-1592413 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030895
protein coding gene Chr6:1301354-1348359 (+)
PWK/PhJ MGP_PWKPhJ_G0029240
protein coding gene Chr6:1241286-1284176 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029076
protein coding gene Chr6:1388384-1432908 (+)
WSB/EiJ MGP_WSBEiJ_G0029602
protein coding gene Chr6:1317058-1363505 (+)



Homology
more
  • Human Ortholog
    CASD1, CAS1 domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CASD1, CAS1 domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C7orf12, NBLA04196, SOAT
  • Links
    NCBI Gene ID: 64921
    neXtProt AC: NX_Q96PB1
    UniProt: Q96PB1

  • Chr Location
    7q21.3; chr7:94509858-94633465 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11287
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CASD1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000015189 Ensembl Gene Model | MGI Sequence Detail 42517 C57BL/6J ±  kb
transcript ENSMUST00000015333 Ensembl | MGI Sequence Detail 3961 Not Applicable  
polypeptide ENSMUSP00000015333 Ensembl | MGI Sequence Detail 797 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 57
    cDNA 56
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 28
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:84436 Ono R, et al., Identification of a large novel imprinted gene cluster on mouse proximal chromosome 6. Genome Res. 2003 Jul;13(7):1696-705
  • Latest
    J:274713 Mahajan VS, et al., Alterations in sialic-acid O-acetylation glycoforms during murine erythrocyte development. Glycobiology. 2019 Mar 1;29(3):222-228

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/15/2019
MGI 6.14
The Jackson Laboratory