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BC002059 Gene Detail
Summary
  • Symbol
    BC002059
  • Name
    cDNA sequence BC002059
  • Synonyms
    MGC:6110
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2384864
    NCBI Gene: 213811
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:17171801-17194419 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 9.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    58 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384864
lncRNA gene Chr17:17171798-17194419 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0005683
lincRNA gene Chr17:14558663-14573403 (+)
AKR/J MGP_AKRJ_G0005662
lincRNA gene Chr17:14615413-14616273 (+)
BALB/cJ MGP_BALBcJ_G0005663
lincRNA gene Chr17:14508018-14537984 (+)
C3H/HeJ MGP_C3HHeJ_G0005610
lincRNA gene Chr17:14797430-14798290 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005820
lincRNA gene Chr17:15549746-15552732 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0005552
lincRNA gene Chr17:14677030-14677890 (+)
CBA/J MGP_CBAJ_G0005598
lincRNA gene Chr17:16141730-16142590 (+)
DBA/2J MGP_DBA2J_G0005616
lincRNA gene Chr17:14280239-14281099 (+)
FVB/NJ MGP_FVBNJ_G0005642
lincRNA gene Chr17:14094440-14118018 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0005627
lincRNA gene Chr17:15662153-15695150 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005821
lincRNA gene Chr17:14808484-14831561 (+)
PWK/PhJ MGP_PWKPhJ_G0005498
lincRNA gene Chr17:13788578-13789438 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005417
lincRNA gene Chr17:13793771-13794631 (+)
WSB/EiJ MGP_WSBEiJ_G0005604
lincRNA gene Chr17:15129904-15130764 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000060149 Ensembl Gene Model | MGI Sequence Detail 22619 C57BL/6J ±  kb
transcript ENSMUST00000190415 Ensembl | MGI Sequence Detail 1964 Not Applicable  
polypeptide Q99M29 UniProt | EBI | MGI Sequence Detail 292 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR036236 Zinc finger C2H2 superfamily
    IPR013087 Zinc finger C2H2-type
    IPR039938 Zinc finger protein 781
Molecular
Reagents
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  • All nucleic 7
    cDNA 7

    Microarray probesets 2
References
more
  • Summaries
    All 16
    Developmental Gene Expression 1
    Phenotypes 4
  • Earliest
    J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/23/2022
MGI 6.20
The Jackson Laboratory