BC002059 Gene Detail

Summary

• Symbol
  BC002059
• Name
  cDNA sequence BC002059
• Synonyms
  MGC:6110

• Feature Type
  lncRNA gene
• IDs
  MGI:2384864
  NCBI Gene: 213811
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:17171801-17194419 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 9.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2384864	lncRNA gene	Chr17:17171798-17194419 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0005683	lincRNA gene	Chr17:14558663-14573403 (+)
AKR/J	MGP_AKRJ_G0005662	lincRNA gene	Chr17:14615413-14616273 (+)
BALB/cJ	MGP_BALBcJ_G0005663	lincRNA gene	Chr17:14508018-14537984 (+)
C3H/HeJ	MGP_C3HHeJ_G0005610	lincRNA gene	Chr17:14797430-14798290 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005820	lincRNA gene	Chr17:15549746-15552732 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005552	lincRNA gene	Chr17:14677030-14677890 (+)
CBA/J	MGP_CBAJ_G0005598	lincRNA gene	Chr17:16141730-16142590 (+)
DBA/2J	MGP_DBA2J_G0005616	lincRNA gene	Chr17:14280239-14281099 (+)
FVB/NJ	MGP_FVBNJ_G0005642	lincRNA gene	Chr17:14094440-14118018 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0005627	lincRNA gene	Chr17:15662153-15695150 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005821	lincRNA gene	Chr17:14808484-14831561 (+)
PWK/PhJ	MGP_PWKPhJ_G0005498	lincRNA gene	Chr17:13788578-13789438 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005417	lincRNA gene	Chr17:13793771-13794631 (+)
WSB/EiJ	MGP_WSBEiJ_G0005604	lincRNA gene	Chr17:15129904-15130764 (+)

Homology

• Gene Tree
  BC002059
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  743
• Tissues
  12
• cDNA Data
  7
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000060149 (Evidence)
• NCBI Gene
  213811

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060149	Ensembl Gene Model | MGI Sequence Detail	22619	C57BL/6J
transcript	ENSMUST00000190415	Ensembl | MGI Sequence Detail	1964	Not Applicable
polypeptide	Q99M29	UniProt | EBI | MGI Sequence Detail	292	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR036236 Zinc finger C2H2 superfamily
  IPR013087 Zinc finger C2H2-type
  IPR039938 Zinc finger protein 781

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Developmental Gene Expression 1

  Phenotypes 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for BC002059:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142775	Chr17:17171784-17171815 (+)	-1 bp
Tssr142776	Chr17:17171818-17171851 (+)	34 bp