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BC016579 Gene Detail
Summary
  • Symbol
    BC016579
  • Name
    cDNA sequence, BC016579
  • Synonyms
    MGC:27720
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384848
    NCBI Gene: 212998
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:45626848-45654068 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 29.76 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    383 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384848
protein coding gene Chr16:45626848-45655852 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022855
protein coding gene Chr16:44409019-44436261 (-)
A/J MGP_AJ_G0022820
protein coding gene Chr16:42426163-42453343 (-)
AKR/J MGP_AKRJ_G0022792
protein coding gene Chr16:43817385-43844403 (-)
BALB/cJ MGP_BALBcJ_G0022821
protein coding gene Chr16:42447169-42475781 (-)
C3H/HeJ MGP_C3HHeJ_G0022585
protein coding gene Chr16:43981837-44009707 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023268
protein coding gene Chr16:45430002-45456982 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020782
protein coding gene Chr16:42781426-42808920 (-)
CAST/EiJ MGP_CASTEiJ_G0022110
protein coding gene Chr16:44172812-44201746 (-)
CBA/J MGP_CBAJ_G0022556
protein coding gene Chr16:47336595-47365627 (-)
DBA/2J MGP_DBA2J_G0022688
protein coding gene Chr16:42163471-42191365 (-)
FVB/NJ MGP_FVBNJ_G0022664
protein coding gene Chr16:42076022-42103243 (-)
LP/J MGP_LPJ_G0022756
protein coding gene Chr16:44145167-44172280 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022682
protein coding gene Chr16:46753772-46781651 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023283
protein coding gene Chr16:43831952-43860884 (-)
PWK/PhJ MGP_PWKPhJ_G0021850
protein coding gene Chr16:42531460-42560409 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021681
protein coding gene Chr16:43769280-43796312 (-)
WSB/EiJ MGP_WSBEiJ_G0022155
protein coding gene Chr16:43927268-43955170 (-)



Homology
more
  • Human Ortholog
    C3orf52, chromosome 3 open reading frame 52
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C3orf52, chromosome 3 open reading frame 52
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TTMP
  • Links
    NCBI Gene ID: 79669
    neXtProt AC: NX_Q5BVD1
    UniProt: Q5BVD1

  • Chr Location
    3q13.2; chr3:112086335-112131095 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033187 Ensembl Gene Model | MGI Sequence Detail 27221 C57BL/6J ±  kb
transcript ENSMUST00000036732 Ensembl | MGI Sequence Detail 2142 Not Applicable  
polypeptide ENSMUSP00000037651 Ensembl | MGI Sequence Detail 218 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR033223 TPA-induced transmembrane protein
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 2
References
more
  • Summaries
    All 15
    Gene Ontology 1
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/14/2019
MGI 6.14
The Jackson Laboratory