Zfp280d
Gene Detail

Symbol

Name
ID

Zfp280d
zinc finger protein 280D
MGI:2384583

Synonyms

MGC:36902, Suhw4

Feature Type

protein coding gene

Genetic Map

Chromosome 9
40.08 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr9:72274860-72363777 bp, + strand From VEGA annotation of GRCm38   88918 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:17151  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Zfp280d

Human
homologs

Human Homolog		ZNF280D, zinc finger protein 280D
NCBI Gene ID		54816
neXtProt AC		NX_Q6N043
Human Synonyms		SUHW4, ZNF634
Human Chr (Location)		15q21.3; chr15:56630176-56734086 (-)  GRCh38

Mutations,
alleles, and
phenotypes

All mutations/alleles(100) : Gene trapped(98) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )

Interactions

Zfp280d interacts with 293 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (6 annotations)

Process	regulation of transcription, DNA-templated, transcription, DNA-templated
Component	nucleus
Function	DNA binding, metal ion binding

External Resources: FuncBase

Expression

Literature Summary: (2 records)

Data Summary: Results (55)    Tissues (18)    Images (16)    Tissue x Stage Matrix (view)

Assay Type	Results
RNA in situ	47
RT-PCR	8

cDNA source data(99)
External Resources: Allen Institute   GEO   Expression Atlas

Molecular
reagents

All nucleic(101) cDNA(100) Primer pair(1)
Microarray probesets(3)

Other database
links

VEGA Gene Model	OTTMUSG00000044709 (Evidence)
Ensembl Gene Model	ENSMUSG00000038535 (Evidence)
Entrez Gene	235469 (Evidence)
UniGene	242791
DFCI	TC1605809, TC1593862, TC1578082, TC1615424
DoTS	DT.101186676, DT.101377815, DT.101291090, DT.101249221, DT.531014, DT.102551358, DT.55151630, DT.87040752, DT.99623436, DT.94184963
Consensus CDS Project	CCDS40683.1
International Mouse Knockout Project Status	Zfp280d

Sequences

Length	Strain/Species
genomic	OTTMUSG00000044709	VEGA Gene Model | MGI Sequence Detail	88918	C57BL/6J
transcript	OTTMUST00000117557	VEGA | MGI Sequence Detail	4387	Not Applicable
polypeptide	OTTMUSP00000065714	VEGA | MGI Sequence Detail	974	Not Applicable

All sequences(142) RefSeq(18) UniProt(25)

Polymorphisms

SNPs within 2kb(338 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR025243	Domain of unknown function DUF4195
InterPro	IPR007087	Zinc finger, C2H2
InterPro	IPR015880	Zinc finger, C2H2-like
Protein Ontology	PR:000017803	zinc finger protein 280D

References

(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(36)