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Msantd2 Gene Detail
Summary
  • Symbol
    Msantd2
  • Name
    Myb/SANT-like DNA-binding domain containing 2
  • Synonyms
    2810450G17Rik, 9530092B10Rik, BC024479, MGC:37388
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384579
    NCBI Gene: 235184
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:37400317-37435921 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 20.77 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    223 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384579
 protein coding gene Chr9:37397034-37437406 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034565
 protein coding gene Chr9:35480075-35521183 (+)
A/J MGP_AJ_G0034544
 protein coding gene Chr9:34532394-34568581 (+)
AKR/J MGP_AKRJ_G0034471
 protein coding gene Chr9:35290752-35327084 (+)
BALB/cJ MGP_BALBcJ_G0034535
 protein coding gene Chr9:34371098-34406415 (+)
C3H/HeJ MGP_C3HHeJ_G0034248
 protein coding gene Chr9:35720097-35756320 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035057
 protein coding gene Chr9:36618556-36656498 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031983
 protein coding gene Chr9:33637604-33672085 (+)
CAST/EiJ MGP_CASTEiJ_G0033569
 protein coding gene Chr9:35417158-35455058 (+)
CBA/J MGP_CBAJ_G0034221
 protein coding gene Chr9:37879670-37921547 (+)
DBA/2J MGP_DBA2J_G0034379
 protein coding gene Chr9:34578953-34615016 (+)
FVB/NJ MGP_FVBNJ_G0034320
 protein coding gene Chr9:33832079-33867898 (+)
LP/J MGP_LPJ_G0034464
 protein coding gene Chr9:35661552-35699447 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034366
 protein coding gene Chr9:39479271-39517432 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035076
 protein coding gene Chr9:35226618-35265950 (+)
PWK/PhJ MGP_PWKPhJ_G0033275
 protein coding gene Chr9:34475488-34512018 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033109
 protein coding gene Chr9:35424290-35462334 (+)
WSB/EiJ MGP_WSBEiJ_G0033685
 protein coding gene Chr9:35044024-35082943 (+)



Homology
more
  • Human Ortholog
    MSANTD2, Myb/SANT DNA binding domain containing 2
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MSANTD2, Myb/SANT DNA binding domain containing 2
  • Synonyms
    C11orf61
  • Links
    NCBI Gene ID: 79684
    neXtProt AC: NX_Q6P1R3
    UniProt: Q6P1R3

  • Chr Location
    11q24.2; chr11:124766498-124800706 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000042138 Ensembl Gene Model | MGI Sequence Detail 35605 C57BL/6J ±  kb
    transcript ENSMUST00000239459 Ensembl | MGI Sequence Detail 2591 Not Applicable  
    polypeptide ENSMUSP00000159310 Ensembl | MGI Sequence Detail 647 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000031578 Myb/SANT-like DNA-binding domain-containing protein 2
      (term hierarchy)
    • InterPro Domains
      IPR044822 Myb/SANT-like DNA-binding domain 4
      IPR042792 Myb/SANT-like DNA-binding domain-containing protein 2
    Molecular
    Reagents
    less
    • All nucleic 6
      cDNA 6

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:1920016, MGI:1926120
    References
    more
    • Summaries
      All 27
      Developmental Gene Expression 1
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory