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Msantd2 Gene Detail
Summary
  • Symbol
    Msantd2
  • Name
    Myb/SANT-like DNA-binding domain containing 2
  • Synonyms
    2810450G17Rik, 9530092B10Rik, BC024479, MGC:37388
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384579
    NCBI Gene: 235184
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:37489021-37524625 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 20.77 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    227 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384579
protein coding gene Chr9:37487532-37526113 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034565
protein coding gene Chr9:35480075-35521183 (+)
A/J MGP_AJ_G0034544
protein coding gene Chr9:34532394-34568581 (+)
AKR/J MGP_AKRJ_G0034471
protein coding gene Chr9:35290752-35327084 (+)
BALB/cJ MGP_BALBcJ_G0034535
protein coding gene Chr9:34371098-34406415 (+)
C3H/HeJ MGP_C3HHeJ_G0034248
protein coding gene Chr9:35720097-35756320 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035057
protein coding gene Chr9:36618556-36656498 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031983
protein coding gene Chr9:33637604-33672085 (+)
CAST/EiJ MGP_CASTEiJ_G0033569
protein coding gene Chr9:35417158-35455058 (+)
CBA/J MGP_CBAJ_G0034221
protein coding gene Chr9:37879670-37921547 (+)
DBA/2J MGP_DBA2J_G0034379
protein coding gene Chr9:34578953-34615016 (+)
FVB/NJ MGP_FVBNJ_G0034320
protein coding gene Chr9:33832079-33867898 (+)
LP/J MGP_LPJ_G0034464
protein coding gene Chr9:35661552-35699447 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034366
protein coding gene Chr9:39479271-39517432 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035076
protein coding gene Chr9:35226618-35265950 (+)
PWK/PhJ MGP_PWKPhJ_G0033275
protein coding gene Chr9:34475488-34512018 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033109
protein coding gene Chr9:35424290-35462334 (+)
WSB/EiJ MGP_WSBEiJ_G0033685
protein coding gene Chr9:35044024-35082943 (+)



Homology
more
  • Human Ortholog
    MSANTD2, Myb/SANT DNA binding domain containing 2
  • Vertebrate Orthologs
    8
  • Human Ortholog
    MSANTD2, Myb/SANT DNA binding domain containing 2
    Orthology source: HGNC
  • Synonyms
    C11orf61
  • Links
    NCBI Gene ID: 79684
    neXtProt AC: NX_Q6P1R3
    UniProt: Q6P1R3

  • Chr Location
    11q24.2; chr11:124766492-124800879 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000042138 Ensembl Gene Model | MGI Sequence Detail 35605 C57BL/6J ±  kb
transcript ENSMUST00000239459 Ensembl | MGI Sequence Detail 2591 Not Applicable  
polypeptide ENSMUSP00000159310 Ensembl | MGI Sequence Detail 647 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000031578 Myb/SANT-like DNA-binding domain-containing protein 2
  • InterPro Domains
    IPR042792 Myb/SANT-like DNA-binding domain-containing protein 2
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
Other
Accession IDs
less
MGI:1920016, MGI:1926120
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/16/2021
MGI 6.16
The Jackson Laboratory