About   Help   FAQ
Rrp9 Gene Detail
Summary
  • Symbol
    Rrp9
  • Name
    RRP9, small subunit (SSU) processome component, homolog (yeast)
  • Synonyms
    55kDa, D9Wsu10e, MGC:25949, Rnu3ip2, U3-55k
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384313
    NCBI Gene: 27966
  • Gene Overview
    MyGene.info: RRP9
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:106477259-106485422 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 57.59 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    92 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384313
protein coding gene Chr9:106475963-106485424 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035235
protein coding gene Chr9:108290149-108300713 (+)
A/J MGP_AJ_G0035214
protein coding gene Chr9:104372233-104381744 (+)
AKR/J MGP_AKRJ_G0035146
protein coding gene Chr9:106974383-106983846 (+)
BALB/cJ MGP_BALBcJ_G0035208
protein coding gene Chr9:104057869-104069369 (+)
C3H/HeJ MGP_C3HHeJ_G0034918
protein coding gene Chr9:107388240-107397789 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035728
protein coding gene Chr9:111271756-111281250 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032626
protein coding gene Chr9:101862745-101872431 (+)
CAST/EiJ MGP_CASTEiJ_G0034229
protein coding gene Chr9:107293192-107303868 (+)
CBA/J MGP_CBAJ_G0034886
protein coding gene Chr9:115204898-115214200 (+)
DBA/2J MGP_DBA2J_G0035047
protein coding gene Chr9:103834932-103844466 (+)
FVB/NJ MGP_FVBNJ_G0034995
protein coding gene Chr9:102614433-102624785 (+)
LP/J MGP_LPJ_G0035123
protein coding gene Chr9:108507472-108517954 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035034
protein coding gene Chr9:116798789-116808859 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035749
protein coding gene Chr9:107226164-107235614 (+)
PWK/PhJ MGP_PWKPhJ_G0033936
protein coding gene Chr9:104133923-104143428 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033771
protein coding gene Chr9:107295045-107315788 (+)
WSB/EiJ MGP_WSBEiJ_G0034350
protein coding gene Chr9:107121108-107130634 (+)



Homology
more
  • Human Ortholog
    RRP9, ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
  • Vertebrate Orthologs
    9
  • Human Ortholog
    RRP9, ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RNU3IP2, U3-55K
  • Links
    NCBI Gene ID: 9136
    neXtProt AC: NX_O43818
    UniProt: O43818

  • Chr Location
    3p21.2; chr3:51933426-51941941 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 3452
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: RRP9
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 27966 NCBI Gene Model | MGI Sequence Detail 8164 C57BL/6J ±  kb
transcript NM_145620 RefSeq | MGI Sequence Detail 1537 C57BL/6  
polypeptide Q91WM3 UniProt | EBI | MGI Sequence Detail 475 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 54
    Genomic 2
    cDNA 51
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGD-MRK-34098, MGI:106404, MGI:2154779
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory