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Usp11
Gene Detail
Symbol

Name
ID
Usp11
ubiquitin specific peptidase 11
MGI:2384312
Synonyms
6230415D12Rik, MGC:6649
Feature Type
protein coding gene
Genetic Map
Chromosome X
16.20 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:20703906-20720539 bp, + strand
From VEGA annotation of GRCm38

  16634 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:31252  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 zebrafish

HCOP human homology predictions: USP11
Protein SuperFamily: ubiquitin C-terminal hydrolase Ubp12
Gene Tree: Usp11

Human
homologs
USP11, ubiquitin specific peptidase 11
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 8237
neXtProt AC: NX_P51784

Human Synonyms: UHX1

Human Chr (Location): Xp11.23; chrX:47232915-47248328 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(9) Targeted(1)
Incidental mutations (data from CvDC )
Interactions
Usp11 interacts with 143 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (37)    Tissues (3)    Images (25)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 37
cDNA source data(73)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(74) cDNA(74)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000017158 (Evidence)
Ensembl Gene Model ENSMUSG00000031066 (Evidence)
Entrez Gene 236733 (Evidence)
UniGene 34489
DFCI TC1575132, TC1658288
DoTS DT.111033494, DT.486472, DT.94127602
NIA Mouse Gene Index U019751
EC 3.4.19.12
Consensus CDS Project CCDS53015.1
International Mouse Phenotyping Consortium Status Usp11
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017158 VEGA Gene Model | MGI Sequence Detail 16634 C57BL/6J ±  kb
transcript OTTMUST00000041524 VEGA | MGI Sequence Detail 3467 Not Applicable 
polypeptide OTTMUSP00000018659 VEGA | MGI Sequence Detail 921 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(6) UniProt(6)
Polymorphisms
SNPs within 2kb(80 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
InterPro IPR018200 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
InterPro IPR006615 Peptidase C19, ubiquitin-specific peptidase, DUSP domain
Protein Ontology PR:000017147 ubiquitin carboxyl-terminal hydrolase 11
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:213512 Werber M, et al., The tissue-specific transcriptomic landscape of the mid-gestational mouse embryo. Development. 2014 Jun;141(11):2325-30
All references(35)
Other
accession IDs
MGI:2444517

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory