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Sbno1 Gene Detail
Summary
  • Symbol
    Sbno1
  • Name
    strawberry notch homolog 1 (Drosophila)
  • Synonyms
    9330180L10Rik, MGC:28589, sno
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384298
    NCBI Gene: 243272
Location & Maps
more
  • Sequence Map
    Chr5:124368708-124426001 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      57294 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 63.54 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    SBNO1, strawberry notch homolog 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SBNO1, strawberry notch homolog 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    MOP3, Sno
  • Links
    NCBI Gene ID: 55206
    neXtProt AC: NX_A3KN83

  • Chr Location
    12q24.31; chr12:123289109-123365525 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 10055
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: SBNO1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    45
  • Chemically induced (other)
    1
  • Gene trapped
    42
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    2 involving Sbno1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000054850 VEGA Gene Model | MGI Sequence Detail 57294 C57BL/6J ±  kb
transcript OTTMUST00000135906 VEGA | MGI Sequence Detail 10161 Not Applicable  
polypeptide OTTMUSP00000071836 VEGA | MGI Sequence Detail 1391 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    210 from dbSNP Build 142
Protein
Information
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  • UniProt
    15 Sequences
  • Protein Ontology
    PR:000014476 protein strawberry notch homolog 1
  • InterPro Domains
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR026741 Protein strawberry notch
    IPR026937 Strawberry notch, helicase C domain
Molecular
Reagents
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  • All nucleic 15
    cDNA 13
    Primer pair 1
    Other 1

    Microarray probesets 10
Other
Accession IDs
less
MGI:2140987, MGI:2141239
References
more
  • Summaries
    All 35
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 13
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory