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Rbm47 Gene Detail
Summary
  • Symbol
    Rbm47
  • Name
    RNA binding motif protein 47
  • Synonyms
    9530077J19Rik, MGC:18900
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384294
    NCBI Gene: 245945
  • Gene Overview
    MyGene.info: RBM47
Location & Maps
more
  • Sequence Map
    Chr5:66016549-66173118 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      156570 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 33.93 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    RBM47, RNA binding motif protein 47
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RBM47, RNA binding motif protein 47
    Orthology source: HomoloGene, HGNC
  • Synonyms
    NET18
  • Links
    NCBI Gene ID: 54502
    neXtProt AC: NX_A0AV96

  • Chr Location
    4p14; chr4:40423255-40630786 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 36932
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: RBM47
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    29 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    106
  • Chemically induced (other)
    2
  • Gene trapped
    97
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    5
  • Genomic Mutations
    4 involving Rbm47
  • Incidental Mutations
Mice homozygous for a gene-trapped allele exhibit partial prenatal lethality. Surviving adults are small and display impaired cytidine to uridine RNA editing.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022238 VEGA Gene Model | MGI Sequence Detail 156570 C57BL/6J ±  kb
transcript OTTMUST00000052909 VEGA | MGI Sequence Detail 4703 Not Applicable  
polypeptide OTTMUSP00000025141 VEGA | MGI Sequence Detail 590 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    1240 from dbSNP Build 142
Protein
Information
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  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000013804 RNA-binding protein 47
  • InterPro Domains
    IPR006535 HnRNP R/Q splicing factor
    IPR012677 Nucleotide-binding alpha-beta plait domain
    IPR000504 RNA recognition motif domain
Molecular
Reagents
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  • All nucleic 16
    cDNA 15
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2442481
References
more
  • Summaries
    All 38
    Developmental Gene Expression 5
    Gene Ontology 4
    Phenotypes 29
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:229897 Fossat N, et al., Conditional restoration and inactivation of Rbm47 reveal its tissue-context requirement for viability and growth. Genesis. 2016 Mar;54(3):115-22

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/27/2016
MGI 6.05
The Jackson Laboratory