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Fgd4
Gene Detail
Symbol

Name
ID
Fgd4
FYVE, RhoGEF and PH domain containing 4
MGI:2183747
Synonyms
9330209B17Rik, Frabin, Frabin-alpha, Frabin-beta, Frabin-gamma, ZFYVE6
Feature Type
protein coding gene
Genetic Map
Chromosome 16
10.18 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr16:16416917-16600549 bp, - strand
From VEGA annotation of GRCm38

  183633 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:26727  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: FGD4
Protein SuperFamily: FYVE, RhoGEF and PH domain containing protein(1-4)
Gene Tree: Fgd4

Human
homologs
FGD4, FYVE, RhoGEF and PH domain containing 4
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 121512
neXtProt AC: NX_Q96M96

Human Synonyms: CMT4H, FRABP, ZFYVE6

Human Chr (Location): 12p11.21; chr12:32399541-32646050 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human FGD4

Mutations,
alleles, and
phenotypes
All mutations/alleles(79) : Gene trapped(72) Targeted(7)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a knock-out allele display dysmyelination in early peripheral nerve development, followed by severe myelin abnormalities, demyelinationn, nervous system electrophysiological deficits, and decreased grip strength at later stages.
 
Human Diseases Modeled in Mice Using Fgd4 (1)    Mutations Annotated to Human Diseases (1)   
Interactions
Fgd4 interacts with 467 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process activation of JUN kinase activity, lamellipodium assembly, ...
Component actin cytoskeleton, cell projection, ...
Function actin binding, actin filament binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (115)    Tissues (19)    Images (25)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 115
cDNA source data(15)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase fgd4    NEW 
Molecular
reagents
All nucleic(17) cDNA(17)
Microarray probesets(7)
Other database
links
VEGA Gene Model OTTMUSG00000030883 (Evidence)
Ensembl Gene Model ENSMUSG00000022788 (Evidence)
Entrez Gene 224014 (Evidence)
DFCI TC1705276, TC1592927, TC1580379, TC1639823, TC1598049, TC1611971, TC1596473, TC1593173, TC1595663
DoTS DT.60101205, DT.524045, DT.40164610, DT.110710690, DT.40155285, DT.110710704, DT.110710719, DT.87031725, DT.91378972, DT.97352642
NIA Mouse Gene Index U290456, U182164, U036828
Consensus CDS Project CCDS27986.1, CCDS49773.1, CCDS49774.1
International Mouse Phenotyping Consortium Status Fgd4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030883 VEGA Gene Model | MGI Sequence Detail 183633 C57BL/6J ±  kb
transcript OTTMUST00000076425 VEGA | MGI Sequence Detail 8342 Not Applicable 
polypeptide OTTMUSP00000040229 VEGA | MGI Sequence Detail 766 Not Applicable 

For the selected sequences
All sequences(121) RefSeq(25) UniProt(5)
Polymorphisms
SNPs within 2kb(322 from dbSNP Build 137)    SNPs within 2kb including multiple locations(326)
Protein-related
information
ResourceIDDescription
InterPro IPR000219 Dbl homology (DH) domain
InterPro IPR001849 Pleckstrin homology domain
InterPro IPR011993 Pleckstrin homology-like domain
InterPro IPR017455 Zinc finger, FYVE-related
InterPro IPR000306 Zinc finger, FYVE-type
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
Protein Ontology PR:000007476 FYVE, RhoGEF and PH domain-containing protein 4
References
(Earliest) J:78214 Obaishi H, et al., Frabin, a novel FGD1-related actin filament-binding protein capable of changing cell shape and activating c-Jun N-terminal kinase. J Biol Chem. 1998 Jul 24;273(30):18697-700
(Latest) J:190437 Horn M, et al., Myelin is dependent on the Charcot-Marie-Tooth Type 4H disease culprit protein FRABIN/FGD4 in Schwann cells. Brain. 2012 Dec;135(Pt 12):3567-83
All references(41)
Disease annotation references (1)
Other
accession IDs
MGI:2442956

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory