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Cntnap4 Gene Detail
Summary
  • Symbol
    Cntnap4
  • Name
    contactin associated protein-like 4
  • Synonyms
    Caspr4, E130114F09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2183572
    NCBI Gene: 170571
  • Gene Overview
    MyGene.info: CNTNAP4
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:112570043-112882717 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 58.70 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1634 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2183572
protein coding gene Chr8:112569963-112882717 (.)
129S1/SvImJ MGP_129S1SvImJ_G0034154
protein coding gene Chr8:115444701-115766867 (+)
A/J MGP_AJ_G0034134
protein coding gene Chr8:110727608-111025961 (+)
AKR/J MGP_AKRJ_G0034061
protein coding gene Chr8:113988546-114308834 (+)
BALB/cJ MGP_BALBcJ_G0034128
protein coding gene Chr8:110928152-111245132 (+)
C3H/HeJ MGP_C3HHeJ_G0033839
protein coding gene Chr8:114695717-115011665 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034648
protein coding gene Chr8:119474785-119811226 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031590
protein coding gene Chr8:103786998-104077570 (+)
CAST/EiJ MGP_CASTEiJ_G0033166
protein coding gene Chr8:114369222-114683725 (+)
CBA/J MGP_CBAJ_G0033812
protein coding gene Chr8:123608732-123963365 (+)
DBA/2J MGP_DBA2J_G0033968
protein coding gene Chr8:109996476-110301570 (+)
FVB/NJ MGP_FVBNJ_G0033911
protein coding gene Chr8:108973003-109287300 (+)
LP/J MGP_LPJ_G0034057
protein coding gene Chr8:115593479-115920901 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033958
protein coding gene Chr8:126405048-126768932 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034666
protein coding gene Chr8:113993226-114314518 (+)
PWK/PhJ MGP_PWKPhJ_G0032868
protein coding gene Chr8:109635463-109934964 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032708
protein coding gene Chr8:112645444-112948913 (+)
WSB/EiJ MGP_WSBEiJ_G0033282
protein coding gene Chr8:114688879-115016651 (+)



Homology
more
  • Human Ortholog
    CNTNAP4, contactin associated protein like 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CNTNAP4, contactin associated protein like 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CASPR4
  • Links
    NCBI Gene ID: 85445
    neXtProt AC: NX_Q9C0A0
    UniProt: Q9C0A0

  • Chr Location
    16q23.1; chr16:76277217-76563610 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous knock-out mice show increased midbrain dopaminergic release in the nucleus accumbens, synaptic defects, impaired sensory-motor gating, and increased grooming behavior.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031772 Ensembl Gene Model | MGI Sequence Detail 312675 C57BL/6J ±  kb
transcript ENSMUST00000118171 Ensembl | MGI Sequence Detail 4860 Not Applicable  
polypeptide ENSMUSP00000112511 Ensembl | MGI Sequence Detail 1310 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    4 Sequences
  • InterPro Domains
    IPR000421 Coagulation factor 5/8 C-terminal domain
    IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
    IPR028875 Contactin-associated protein-like 4
    IPR000742 EGF-like domain
    IPR002181 Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
    IPR036056 Fibrinogen-like, C-terminal
    IPR008979 Galactose-binding-like domain superfamily
    IPR001791 Laminin G domain
Molecular
Reagents
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  • All nucleic 7
    cDNA 7

    Microarray probesets 2
Other
Accession IDs
less
MGI:2443222
References
more
  • Summaries
    All 26
    Developmental Gene Expression 4
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:77463 Spiegel I, et al., Caspr3 and caspr4, two novel members of the caspr family are expressed in the nervous system and interact with PDZ domains. Mol Cell Neurosci. 2002 Jun;20(2):283-97
  • Latest
    J:255594 Peng YR, et al., Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell. Neuron. 2017 Aug 16;95(4):869-883.e6

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory