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Rab40b Gene Detail
Summary
  • Symbol
    Rab40b
  • Name
    Rab40B, member RAS oncogene family
  • Synonyms
    rar
  • Feature Type
    protein coding gene
  • IDs
    MGI:2183451
    NCBI Gene: 217371
Location & Maps
more
  • Sequence Map
    Chr11:121356125-121388251 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      32127 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 85.28 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    RAB40B, RAB40B, member RAS oncogene family
  • Vertebrate Orthologs
    8
  • Human Ortholog
    RAB40B, RAB40B, member RAS oncogene family
    Orthology source: HomoloGene
  • Synonyms
    RAR, SEC4L
  • Links
    NCBI Gene ID: 10966
    neXtProt AC: NX_Q12829

  • Chr Location
    17q25.3; chr17:82654959-82698722 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000004681 VEGA Gene Model | MGI Sequence Detail 32127 C57BL/6J ±  kb
transcript OTTMUST00000010557 VEGA | MGI Sequence Detail 1861 Not Applicable  
polypeptide OTTMUSP00000005004 VEGA | MGI Sequence Detail 279 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    235 from dbSNP Build 142
Protein
Information
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  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000013627 ras-related protein Rab-40B
  • InterPro Domains
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR001806 Small GTPase superfamily
    IPR005225 Small GTP-binding protein domain
    IPR001496 SOCS box domain
Molecular
Reagents
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  • All nucleic 10
    cDNA 10

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:82306 Kile BT, et al., The SOCS box: a tale of destruction and degradation. Trends Biochem Sci. 2002 May;27(5):235-41
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory