Pkhd1l1 MGI Mouse Gene Detail - MGI:2183153 - polycystic kidney and hepatic disease 1-like 1

Symbol

Pkhd1l1
Name

polycystic kidney and hepatic disease 1-like 1
Synonyms

D86 mRNA, fibrocystin L, PKHDL1

Feature Type

protein coding gene
IDs

MGI:2183153
NCBI Gene: 192190
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr15:44457494-44601369 bp, + strand
From Ensembl annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 15, 16.91 cM, cytoband B3
Mapping Data

2 experiments

SNPs within 2kb

994 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2183153	protein coding gene	Chr15:44457396-44601376 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0021831	protein coding gene	Chr15:43075558-43223009 (+)
A/J	MGP_AJ_G0021791	protein coding gene	Chr15:41437701-41574123 (+)
AKR/J	MGP_AKRJ_G0021772	protein coding gene	Chr15:42662751-42797157 (+)
BALB/cJ	MGP_BALBcJ_G0021798	protein coding gene	Chr15:41515028-41649226 (+)
C3H/HeJ	MGP_C3HHeJ_G0021572	protein coding gene	Chr15:42575214-42716381 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0022237	protein coding gene	Chr15:44743415-44906632 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019774	protein coding gene	Chr15:38972399-39108698 (+)
CAST/EiJ	MGP_CASTEiJ_G0021089	protein coding gene	Chr15:43092568-43245878 (+)
CBA/J	MGP_CBAJ_G0021541	protein coding gene	Chr15:46304845-46447955 (+)
DBA/2J	MGP_DBA2J_G0021665	protein coding gene	Chr15:41242765-41378826 (+)
FVB/NJ	MGP_FVBNJ_G0021643	protein coding gene	Chr15:40540317-40681182 (+)
LP/J	MGP_LPJ_G0021735	protein coding gene	Chr15:42843988-42988743 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021667	protein coding gene	Chr15:49678643-49858672 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022260	protein coding gene	Chr15:42846771-42983371 (+)
PWK/PhJ	MGP_PWKPhJ_G0020834	protein coding gene	Chr15:41295360-41436761 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0020671	protein coding gene	Chr15:42529239-42671934 (+)
WSB/EiJ	MGP_WSBEiJ_G0021144	protein coding gene	Chr15:42739034-42888703 (+)

Human Ortholog

PKHD1L1, PKHD1 like 1

Vertebrate Orthologs

10

Human Ortholog

PKHD1L1, PKHD1 like 1
Orthology source: HomoloGene, HGNC
Synonyms

PKHDL1
Links

HGNC:20313

NCBI Gene ID: 93035

neXtProt AC: NX_Q86WI1

UniProt: Q86WI1
Chr Location

8q23.1-q23.2; chr8:109362477-109536809 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 16332
1 human;1 mouse;1 rat;1 chimpanzee;1 dog;2 zebrafish;2 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: PKHD1L1
Gene Tree

Pkhd1l1

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Phenotype Summary

10 phenotypes from 2 alleles in 3 genetic backgrounds
9 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

7
Chemically induced (other)

2
Endonuclease-mediated

2
Targeted

3
Genomic Mutations

2 involving Pkhd1l1
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

149 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

5
GO References

2

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

708
Tissues

56
cDNA Data

12
Literature Summary

3

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase pkhd1l1.1

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All Sequences

47
RefSeq

10
UniProt

3
CCDS

CCDS84169.1
UniGene

211494

Ensembl

ENSMUSG00000038725 (Evidence)
NCBI Gene

192190

			Length	Strain/Species	Flank
genomic	ENSMUSG00000038725	Ensembl Gene Model \| MGI Sequence Detail	143876	C57BL/6J	± kb
transcript	ENSMUST00000209244	Ensembl \| MGI Sequence Detail	12949	Not Applicable
polypeptide	ENSMUSP00000147447	Ensembl \| MGI Sequence Detail	4249	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000012778 fibrocystin-L

(term hierarchy)
InterPro Domains

IPR008972 Cupredoxin

IPR029927 Fibrocystin-L

IPR019316 G8 domain

IPR014756 Immunoglobulin E-set

IPR013783 Immunoglobulin-like fold

IPR002909 IPT domain

IPR011658 PA14 domain

IPR037524 PA14/GLEYA domain

IPR006626 Parallel beta-helix repeat

IPR012334 Pectin lyase fold

IPR011050 Pectin lyase fold/virulence factor

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All nucleic 14

Genomic 1

cDNA 12

Primer pair 1

Microarray probesets 2

Summaries

All 31

Developmental Gene Expression 3

Gene Ontology 2

Phenotypes 9
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Latest

J:280240 Wu X, et al., PKHD1L1 is a coat protein of hair-cell stereocilia and is required for normal hearing. Nat Commun. 2019 Aug 23;10(1):3801

TSS for Pkhd1l1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131226	Chr15:44457423-44457434 (+)	-65 bp
Tssr131227	Chr15:44457445-44457486 (+)	-28 bp
Tssr131228	Chr15:44457491-44457496 (+)	0 bp
Tssr131229	Chr15:44457498-44457517 (+)	14 bp
Tssr131230	Chr15:44457522-44457534 (+)	34 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 10/20/2020 MGI 6.16