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Gin1 Gene Detail
Summary
  • Symbol
    Gin1
  • Name
    gypsy retrotransposon integrase 1
  • Synonyms
    4930429M06, 4930429M06Rik, Zh2c2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2182036
    NCBI Gene: 252876
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:97770172-97793709 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 47.76 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    278 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2182036
protein coding gene Chr1:97770172-97793710 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016360
protein coding gene Chr1:99547762-99570117 (+)
A/J MGP_AJ_G0016344
protein coding gene Chr1:96057605-96080354 (+)
AKR/J MGP_AKRJ_G0016304
protein coding gene Chr1:98835968-98859033 (+)
BALB/cJ MGP_BALBcJ_G0016300
protein coding gene Chr1:96218410-96239581 (+)
C3H/HeJ MGP_C3HHeJ_G0016127
protein coding gene Chr1:99133892-99154410 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016759
protein coding gene Chr1:103490030-103517279 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014477
protein coding gene Chr1:90331740-90351038 (+)
CAST/EiJ MGP_CASTEiJ_G0015709
protein coding gene Chr1:98252170-98275536 (+)
CBA/J MGP_CBAJ_G0016100
protein coding gene Chr1:106877615-106906390 (+)
DBA/2J MGP_DBA2J_G0016205
protein coding gene Chr1:95266373-95287625 (+)
FVB/NJ MGP_FVBNJ_G0016206
protein coding gene Chr1:94260099-94283751 (+)
LP/J MGP_LPJ_G0016279
protein coding gene Chr1:100834146-100858660 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016232
protein coding gene Chr1:110605579-110630153 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016798
protein coding gene Chr1:98845939-98872398 (+)
PWK/PhJ MGP_PWKPhJ_G0015497
protein coding gene Chr1:94452125-94474717 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015281
protein coding gene Chr1:97684645-97706124 (+)
WSB/EiJ MGP_WSBEiJ_G0015772
protein coding gene Chr1:98681474-98708134 (+)



Homology
more
  • Human Ortholog
    GIN1, gypsy retrotransposon integrase 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    GIN1, gypsy retrotransposon integrase 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GIN-1, TGIN1, ZH2C2
  • Links
    NCBI Gene ID: 54826
    neXtProt AC: NX_Q9NXP7
    UniProt: Q9NXP7

  • Chr Location
    5q21.1; chr5:103086000-103120149 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026333 Ensembl Gene Model | MGI Sequence Detail 23538 C57BL/6J ±  kb
transcript ENSMUST00000112844 Ensembl | MGI Sequence Detail 2046 Not Applicable  
polypeptide ENSMUSP00000108464 Ensembl | MGI Sequence Detail 518 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 31
    cDNA 31

    Microarray probesets 6
References
more
  • Summaries
    All 31
    Gene Ontology 1
    Phenotypes 11
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/26/2019
MGI 6.14
The Jackson Laboratory