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Rfxap
Gene Detail
 Symbol
Name
ID
Rfxap
regulatory factor X-associated protein
MGI:2180854
Synonyms 5730495K23Rik
Feature Type protein coding gene
Genetic Map
Chromosome 3
25.69 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:54803115-54807791 bp, - strand
From VEGA annotation of GRCm38

  4677 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:452  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Rfxap

Human
homologs
Human Homolog RFXAP, regulatory factor X-associated protein
NCBI Gene ID 5994
neXtProt AC  NX_O00287
Human Chr (Location)  13q14; chr13:36819202-36829603 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human RFXAP
Interactions
Rfxap interacts with 163 markers (Mir17, Mir19a, Mir19b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process positive regulation of transcription, DNA-templated
Component nucleus
Function DNA binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (100)    Tissues (99)   
Theiler Stages: 17, 19, 22
Assay TypeResults
RNA in situ 98
RT-PCR 2
cDNA source data(35)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(36) cDNA(35) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000043569 (Evidence)
Ensembl Gene ModelENSMUSG00000036615 (Evidence)
Entrez Gene170767 (Evidence)
UniGene185735
DFCITC1582773, TC1602990
DoTSDT.87068527
NIA Mouse Gene IndexU024054
Consensus CDS ProjectCCDS50907.1
International Mouse Knockout Project StatusRfxap
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000043569 VEGA Gene Model | MGI Sequence Detail 4677 C57BL/6J ±  kb
transcript OTTMUST00000114383 VEGA | MGI Sequence Detail 2162 Not Applicable 
polypeptide OTTMUSP00000063838 VEGA | MGI Sequence Detail 231 Not Applicable 

For the selected sequences
All sequences(32) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(50 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000013931 regulatory factor X-associated protein
References (Earliest) J:64911 Inoue S, et al., Growth suppression of Escherichia coli by induction of expression of mammalian genes with transmembrane or ATPase domains. Biochem Biophys Res Commun. 2000 Feb 16;268(2):553-61
(Latest) J:156017 Yokoyama S, et al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev Cell. 2009 Dec;17(6):836-48
All references(28)
Other
accession IDs
MGI:2444693

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory