Rfxap
Gene Detail

Symbol Name ID

Rfxap regulatory factor X-associated protein MGI:2180854

Synonyms

5730495K23Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 3

25.69 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr3:54803116-54807791 bp, - strand From Ensembl annotation of GRCm38   4676 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:452  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Rfxap

Human homologs

Human Homolog		RFXAP, regulatory factor X-associated protein
NCBI Gene ID		5994
neXtProt AC		NX_O00287
Human Chr (Location)		13q14; chr13:37393339-37403740 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human RFXAP

Gene Ontology (GO) classifications

All GO classifications: (3 annotations)

Process	positive regulation of transcription, DNA-dependent
Component	nucleus
Function	DNA binding

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (100)    Tissues (99)   
Theiler Stages: 17, 19, 22

Assay Type	Results
RNA in situ	98
RT-PCR	2

cDNA source data(35)
External Resources: GEO   ArrayExpress

Molecular reagents

All nucleic(36) cDNA(35) Primer pair(1)
Microarray probesets(4)

Other database links

Ensembl Gene Model	ENSMUSG00000036615 (Evidence)
Entrez Gene	170767 (Evidence)
UniGene	185735
DFCI	TC1582773, TC1602990
DoTS	DT.87068527
NIA Mouse Gene Index	U024054
Consensus CDS Project	CCDS50907.1
International Mouse Knockout Project Status	Rfxap

Sequences

Length	Strain/Species
genomic	ENSMUSG00000036615	Ensembl Gene Model | MGI Sequence Detail	4676	C57BL/6J
transcript	ENSMUST00000044373	Ensembl | MGI Sequence Detail	2161	Not Applicable
polypeptide	ENSMUSP00000040917	Ensembl | MGI Sequence Detail	231	Not Applicable

All sequences(25) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(46 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
Protein Ontology	PR:000013931	regulatory factor X-associated protein

References

(Earliest) J:64911 Inoue S, et al., Growth suppression of Escherichia coli by induction of expression of mammalian genes with transmembrane or ATPase domains. Biochem Biophys Res Commun. 2000 Feb 16;268(2):553-61
(Latest) J:156017 Yokoyama S, et al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev Cell. 2009 Dec;17(6):836-48
All references(27)

Other accession IDs

MGI:2444693