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Defb13 Gene Detail
Summary
  • Symbol
    Defb13
  • Name
    defensin beta 13
  • Feature Type
    protein coding gene
  • IDs
    MGI:2179203
    NCBI Gene: 246083
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:21946755-21948622 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 10.68 cM, cytoband A4
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2179203
protein coding gene Chr8:21946755-21948850 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033439
protein coding gene Chr8:19783361-19785431 (+)
A/J MGP_AJ_G0033419
protein coding gene Chr8:19136715-19138829 (+)
AKR/J MGP_AKRJ_G0033344
protein coding gene Chr8:19767616-19769698 (+)
BALB/cJ MGP_BALBcJ_G0033415
protein coding gene Chr8:19262486-19264568 (+)
C3H/HeJ MGP_C3HHeJ_G0033129
protein coding gene Chr8:19957837-19959931 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033931
protein coding gene Chr8:20630683-20632759 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0032455
protein coding gene Chr8:19389019-19391113 (+)
CBA/J MGP_CBAJ_G0033104
protein coding gene Chr8:21453377-21455469 (+)
DBA/2J MGP_DBA2J_G0033259
protein coding gene Chr8:19115454-19117552 (+)
FVB/NJ MGP_FVBNJ_G0033203
protein coding gene Chr8:18908825-18911205 (+)
LP/J MGP_LPJ_G0033348
protein coding gene Chr8:19789821-19791905 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033246
protein coding gene Chr8:21057834-21059916 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033950
protein coding gene Chr8:19659563-19661651 (+)
PWK/PhJ MGP_PWKPhJ_G0032167
protein coding gene Chr8:18702457-18704554 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032000
protein coding gene Chr8:19056676-19059125 (+)
WSB/EiJ MGP_WSBEiJ_G0032571
protein coding gene Chr8:19855648-19857728 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 246083 NCBI Gene Model | MGI Sequence Detail 1868 C57BL/6J ±  kb
transcript NM_139223 RefSeq | MGI Sequence Detail 231 C57BL/6  
polypeptide Q8R2I4 UniProt | EBI | MGI Sequence Detail 64 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less

  • Microarray probesets 2
References
more
  • Summaries
    All 16
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:82526 Morrison GM, et al., Signal Sequence Conservation and Mature Peptide Divergence Within Subgroups of the Murine beta-Defensin Gene Family. Mol Biol Evol. 2003 Mar;20(3):460-70
  • Latest
    J:204187 Zhou YS, et al., Partial deletion of chromosome 8 beta-defensin cluster confers sperm dysfunction and infertility in male mice. PLoS Genet. 2013 Oct;9(10):e1003826

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/11/2020
MGI 6.14
The Jackson Laboratory