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Chodl Gene Detail
Summary
  • Symbol
    Chodl
  • Name
    chondrolectin
  • Synonyms
    3110074E07Rik, MT75, PRED12
  • Feature Type
    protein coding gene
  • IDs
    MGI:2179069
    NCBI Gene: 246048
  • Gene Overview
    MyGene.info: CHODL
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:78930948-78951733 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 45.39 cM, cytoband C3.2
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    209 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2179069
protein coding gene Chr16:78930863-78951733 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022964
protein coding gene Chr16:79103321-79125981 (+)
A/J MGP_AJ_G0022932
protein coding gene Chr16:75619215-75640727 (+)
AKR/J MGP_AKRJ_G0022902
protein coding gene Chr16:77893467-77915592 (+)
BALB/cJ MGP_BALBcJ_G0022934
protein coding gene Chr16:76006591-76027470 (+)
C3H/HeJ MGP_C3HHeJ_G0022696
protein coding gene Chr16:78345934-78369314 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023381
protein coding gene Chr16:81638514-81673876 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020885
protein coding gene Chr16:74026082-74046578 (+)
CAST/EiJ MGP_CASTEiJ_G0022218
protein coding gene Chr16:78756225-78783371 (+)
CBA/J MGP_CBAJ_G0022665
protein coding gene Chr16:85142214-85164465 (+)
DBA/2J MGP_DBA2J_G0022799
protein coding gene Chr16:75451137-75473399 (+)
FVB/NJ MGP_FVBNJ_G0022774
protein coding gene Chr16:74793134-74814877 (+)
LP/J MGP_LPJ_G0022868
protein coding gene Chr16:78809738-78837515 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022793
protein coding gene Chr16:88347981-88371822 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023399
protein coding gene Chr16:78201832-78227088 (+)
PWK/PhJ MGP_PWKPhJ_G0021960
protein coding gene Chr16:75666140-75687091 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021790
protein coding gene Chr16:77899894-77921252 (+)
WSB/EiJ MGP_WSBEiJ_G0022266
protein coding gene Chr16:78472725-78494561 (+)



Homology
more
  • Human Ortholog
    CHODL, chondrolectin
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CHODL, chondrolectin
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C21orf68, MT75, PRED12
  • Links
    NCBI Gene ID: 140578
    neXtProt AC: NX_Q9H9P2
    UniProt: Q9H9P2

  • Chr Location
    21q21.1; chr21:17819329-18267371 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11795
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CHODL
  • Gene Tree
Human Diseases
less
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000022860 Ensembl Gene Model | MGI Sequence Detail 20786 C57BL/6J ±  kb
    transcript ENSMUST00000069148 Ensembl | MGI Sequence Detail 2051 Not Applicable  
    polypeptide ENSMUSP00000063961 Ensembl | MGI Sequence Detail 292 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 25
      Genomic 1
      cDNA 15
      Primer pair 9

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1920461
    References
    more
    • Summaries
      All 52
      Developmental Gene Expression 6
      Diseases 2
      Gene Ontology 6
      Phenotypes 16
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:279080 Ahlfors H, et al., Gene expression dysregulation domains are not a specific feature of Down syndrome. Nat Commun. 2019 Jun 6;10(1):2489

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    Funding Information
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    last database update
    10/08/2019
    MGI 6.14
    The Jackson Laboratory