Vmn1r216 Gene Detail

Summary

• Symbol
  Vmn1r216
• Name
  vomeronasal 1 receptor 216
• Synonyms
  V1ri10

• Feature Type
  protein coding gene
• IDs
  MGI:2159696
  NCBI Gene: 171279
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:23283319-23284215 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 9.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2159696	protein coding gene	Chr13:23281146-23292902 (+)
129S1/SvImJ	ENSMUSG00200013863	protein coding gene	Chr13:20391633-20392691 (+)
A/J	ENSMUSG00195037292	protein coding gene	Chr13:19540756-19541814 (+)
AKR/J	ENSMUSG00220029982	protein coding gene	Chr13:19329576-19330634 (+)
BALB/cJ	ENSMUSG00180031207	protein coding gene	Chr13:19859276-19860334 (+)
C3H/HeJ	ENSMUSG00175033140	protein coding gene	Chr13:19946232-19947290 (+)
C57BL/6NJ	ENSMUSG00215007652	protein coding gene	Chr13:20040233-20041291 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210027623	protein coding gene	Chr13:19901523-19902581 (+)
DBA/2J	ENSMUSG00185020623	protein coding gene	Chr13:20670633-20671691 (+)
FVB/NJ	ENSMUSG00205043346	protein coding gene	Chr13:19733047-19734105 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230033458	protein coding gene	Chr13:29997226-29998284 (+)
NOD/ShiLtJ	ENSMUSG00190018472	protein coding gene	Chr13:19668291-19669349 (+)
NZO/HlLtJ	ENSMUSG00225044529	protein coding gene	Chr13:23774376-23775434 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Vmn1r216
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  19 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS26331.1

• Ensembl
  ENSMUSG00000115697 (Evidence), ENSMUSG00000116057 (Evidence)
• NCBI Gene
  171279

Representative Sequences			Length	Strain/Species
genomic	171279	NCBI Gene Model | MGI Sequence Detail	897	C57BL/6J
transcript	NM_134245	RefSeq | MGI Sequence Detail	897	Not Specified
polypeptide	NP_599006	RefSeq | MGI Sequence Detail	298	Not Specified

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR017452 GPCR, rhodopsin-like, 7TM
  IPR004072 Vomeronasal receptor, type 1

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18