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Vmn1r5 Gene Detail
Summary
  • Symbol
    Vmn1r5
  • Name
    vomeronasal 1 receptor 5
  • Synonyms
    V1rc19
  • Feature Type
    protein coding gene
  • IDs
    MGI:2159455
    NCBI Gene: 171192
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr6:56985342-56986289 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 27.78 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2159455
protein coding gene Chr6:56970273-56988390 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030785
protein coding gene Chr6:56443798-56444851 (+)
A/J MGP_AJ_G0030754
protein coding gene Chr6:53838108-53839163 (+)
AKR/J MGP_AKRJ_G0030681
protein coding gene Chr6:55646899-55647954 (+)
BALB/cJ MGP_BALBcJ_G0030766
protein coding gene Chr6:54232966-54234021 (+)
C3H/HeJ MGP_C3HHeJ_G0030479
protein coding gene Chr6:55717626-55718681 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031221
protein coding gene Chr6:57729320-57730375 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0029883
protein coding gene Chr6:55541718-55542771 (+)
CBA/J MGP_CBAJ_G0030453
protein coding gene Chr6:60117601-60118656 (+)
DBA/2J MGP_DBA2J_G0030603
protein coding gene Chr6:53731501-53732556 (+)
FVB/NJ MGP_FVBNJ_G0030555
protein coding gene Chr6:53320310-53321365 (+)
LP/J MGP_LPJ_G0030688
protein coding gene Chr6:56378066-56379119 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030589
protein coding gene Chr6:62547865-62548920 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031251
protein coding gene Chr6:55623397-55624450 (+)
PWK/PhJ MGP_PWKPhJ_G0029596
protein coding gene Chr6:53421554-53422607 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029429
protein coding gene Chr6:55032511-55033565 (+)
WSB/EiJ MGP_WSBEiJ_G0029959
protein coding gene Chr6:55677698-55678753 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 171192 NCBI Gene Model | MGI Sequence Detail 948 C57BL/6J ±  kb
transcript NM_134174 RefSeq | MGI Sequence Detail 948 Not Specified  
polypeptide NP_598935 RefSeq | MGI Sequence Detail 315 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR004072 Vomeronasal receptor, type 1
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 12
    Gene Ontology 2
  • Earliest
    J:74518 Rodriguez I, et al., Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Nat Neurosci. 2002 Feb;5(2):134-40
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory