Vmn1r26 Gene Detail

Summary

• Symbol
  Vmn1r26
• Name
  vomeronasal 1 receptor 26
• Synonyms
  V1rc17

• Feature Type
  protein coding gene
• IDs
  MGI:2159453
  NCBI Gene: 171190
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:57985168-57986187 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 27.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  17 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2159453	protein coding gene	Chr6:57981919-57992144 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0030811	protein coding gene	Chr6:57551492-57552511 (-)
A/J	MGP_AJ_G0030782	protein coding gene	Chr6:54993126-54994145 (-)
AKR/J	MGP_AKRJ_G0030706	protein coding gene	Chr6:56825247-56826266 (-)
BALB/cJ	MGP_BALBcJ_G0030793	protein coding gene	Chr6:55303930-55304949 (-)
C3H/HeJ	MGP_C3HHeJ_G0030506	protein coding gene	Chr6:56835174-56836193 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0031249	protein coding gene	Chr6:58853140-58854159 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028436	protein coding gene	Chr6:52201230-52202248 (+)
CAST/EiJ	MGP_CASTEiJ_G0029901	protein coding gene	Chr6:56554037-56555056 (-)
CBA/J	MGP_CBAJ_G0030477	protein coding gene	Chr6:61296068-61297087 (-)
DBA/2J	MGP_DBA2J_G0030628	protein coding gene	Chr6:54769766-54770785 (-)
FVB/NJ	MGP_FVBNJ_G0030582	protein coding gene	Chr6:54352464-54353483 (-)
LP/J	MGP_LPJ_G0030714	protein coding gene	Chr6:57482867-57483886 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030616	protein coding gene	Chr6:63788591-63792699 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031273	protein coding gene	Chr6:56704051-56705070 (-)
PWK/PhJ	MGP_PWKPhJ_G0029619	protein coding gene	Chr6:54473375-54474394 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0029446	protein coding gene	Chr6:55943542-55944561 (-)
WSB/EiJ	MGP_WSBEiJ_G0029983	protein coding gene	Chr6:56840253-56841272 (-)

Homology

• Human Ortholog
  VN1R5, vomeronasal 1 receptor 5 (gene/pseudogene)

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  VN1R5, vomeronasal 1 receptor 5 (gene/pseudogene)
  
• Synonyms
  V1RL5
• Links
  HGNC:19870

  NCBI Gene ID: 317705

  neXtProt AC: NX_Q7Z5H4

  UniProt: Q7Z5H4

  
  
• Chr Location
  1q44; chr1:247255972-247257210 (+)  GRCh38

---

• MGI Vertebrate Homology
  Vmn1r26 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: VN1R5
• Gene Tree
  Vmn1r26
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  17 strains or lines available

Expression

• Assay Results
  728
• Tissues
  22
• cDNA Data
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS20190.1

• Ensembl
  ENSMUSG00000048697 (Evidence)
• NCBI Gene
  171190

Representative Sequences			Length	Strain/Species
genomic	171190	NCBI Gene Model | MGI Sequence Detail	1020	C57BL/6J
transcript	NM_134172	RefSeq | MGI Sequence Detail	1020	Not Specified
polypeptide	NP_598933	RefSeq | MGI Sequence Detail	339	Not Specified

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR017452 GPCR, rhodopsin-like, 7TM
  IPR004072 Vomeronasal receptor, type 1

Molecular
Reagents

• All nucleic 4

  cDNA 3

  Primer pair 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Developmental Gene Expression 1
• Earliest
  J:74518 Rodriguez I, et al., Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Nat Neurosci. 2002 Feb;5(2):134-40
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582