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Ms4a3
Gene Detail
Symbol

Name
ID
Ms4a3
membrane-spanning 4-domains, subfamily A, member 3
MGI:2158468
Synonyms
haematopoietic cell-specific transmembrane-4, HTm4
Feature Type
protein coding gene
Genetic Map
Chromosome 19
8.47 cM, cytoband B
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr19:11629496-11640851 bp, - strand
From VEGA annotation of GRCm38

  11356 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4472  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle

Gene Tree: Ms4a3

Human
homologs
Human Homolog MS4A3, membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
NCBI Gene ID 932
neXtProt AC  NX_Q96HJ5
Human Synonyms  CD20L, HTM4
Human Chr (Location)  11q12.1; chr11:60056628-60071115 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ms4a3 interacts with 22 markers (Mir30b, Mir34a, Mir153, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component cytoplasm, integral component of membrane, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (23)    Tissues (1)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 23
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000047243 (Evidence)
Ensembl Gene ModelENSMUSG00000024681 (Evidence)
Entrez Gene170813 (Evidence)
UniGene240438
DFCITC1587900, TC1596179
DoTSDT.94271465, DT.40164433, DT.101340196
Consensus CDS ProjectCCDS29605.1
International Mouse Knockout Project StatusMs4a3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000047243 VEGA Gene Model | MGI Sequence Detail 11356 C57BL/6J ±  kb
transcript OTTMUST00000122159 VEGA | MGI Sequence Detail 966 Not Applicable 
polypeptide OTTMUSP00000067094 VEGA | MGI Sequence Detail 213 Not Applicable 

For the selected sequences
All sequences(32) RefSeq(2) UniProt(7)
Polymorphisms
SNPs within 2kb(97 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007237 CD20-like
Protein Ontology PR:000010657 membrane-spanning 4-domains subfamily A member 3
References
(Earliest) J:73483 Hulett MD, et al., Cloning and characterization of a mouse homologue of the human haematopoietic cell-specific four-transmembrane gene HTm4. Immunol Cell Biol. 2001 Aug;79(4):345-9
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(24)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory