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Rbm39 Gene Detail
Summary
  • Symbol
    Rbm39
  • Name
    RNA binding motif protein 39
  • Synonyms
    1500012C14Rik, 2310040E03Rik, B330012G18Rik, caper, Caper alpha, Rnpc2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2157953
    NCBI Gene: 170791
  • Gene Overview
    MyGene.info: RBM39
  • Alliance
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:156147239-156180238 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 77.36 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    173 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2157953
protein coding gene Chr2:156147239-156180238 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026760
protein coding gene Chr2:161009312-161052801 (-)
A/J MGP_AJ_G0026726
protein coding gene Chr2:154622524-154657110 (-)
AKR/J MGP_AKRJ_G0026697
protein coding gene Chr2:159105112-159138745 (-)
BALB/cJ MGP_BALBcJ_G0026735
protein coding gene Chr2:154907691-154944229 (-)
C3H/HeJ MGP_C3HHeJ_G0026478
protein coding gene Chr2:159464571-159498735 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027184
protein coding gene Chr2:165739364-165777823 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024554
protein coding gene Chr2:148107222-148138707 (-)
CAST/EiJ MGP_CASTEiJ_G0025939
protein coding gene Chr2:159792977-159829842 (-)
CBA/J MGP_CBAJ_G0026455
protein coding gene Chr2:171763890-171803807 (-)
DBA/2J MGP_DBA2J_G0026592
protein coding gene Chr2:153794089-153827387 (-)
FVB/NJ MGP_FVBNJ_G0026559
protein coding gene Chr2:152167493-152201025 (-)
LP/J MGP_LPJ_G0026697
protein coding gene Chr2:161143422-161178603 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026580
protein coding gene Chr2:175711815-175745825 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027240
protein coding gene Chr2:158979287-159014710 (-)
PWK/PhJ MGP_PWKPhJ_G0025673
protein coding gene Chr2:153294642-153329052 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025476
protein coding gene Chr2:157919255-157952297 (-)
WSB/EiJ MGP_WSBEiJ_G0026009
protein coding gene Chr2:159868394-159905638 (-)



Homology
more
  • Human Ortholog
    RBM39, RNA binding motif protein 39
  • Vertebrate Orthologs
    6
  • Human Ortholog
    RBM39, RNA binding motif protein 39
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CAPER, CAPERalpha, FSAP59, HCC1, RNPC2
  • Links
    NCBI Gene ID: 9584
    neXtProt AC: NX_Q14498
    UniProt: Q14498

  • Chr Location
    20q11.22; chr20:35703609-35742336 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous disruption of this locus results in embryonic lethality.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 170791 NCBI Gene Model | MGI Sequence Detail 33000 C57BL/6J ±  kb
transcript NM_001362766 RefSeq | MGI Sequence Detail 3010 C57BL/6  
polypeptide Q8VH51 UniProt | EBI | MGI Sequence Detail 530 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 34
    Genomic 1
    cDNA 32
    Primer pair 1

    Microarray probesets 12
Other
Accession IDs
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MGI:1914382, MGI:1923702, MGI:2139486, MGI:2139542, MGI:2443989
References
more
  • Summaries
    All 44
    Developmental Gene Expression 10
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:256883 Zhou J, et al., Conserved expression of ultra-conserved noncoding RNA in mammalian nervous system. Biochim Biophys Acta. 2017 Dec;1860(12):1159-1168

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory