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Rp9 Gene Detail
Summary
  • Symbol
    Rp9
  • Name
    retinitis pigmentosa 9 (human)
  • Synonyms
    PAP-1, Rp9h
  • Feature Type
    protein coding gene
  • IDs
    MGI:2157166
    NCBI Gene: 55934
  • Gene Overview
    MyGene.info: RP9
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:22448311-22468356 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 9.16 cM, cytoband A4
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    112 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2157166
protein coding gene Chr9:22411047-22469743 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034487
protein coding gene Chr9:19768333-19788378 (-)
A/J MGP_AJ_G0034465
protein coding gene Chr9:19362978-19383905 (-)
AKR/J MGP_AKRJ_G0034391
protein coding gene Chr9:19759484-19780653 (-)
BALB/cJ MGP_BALBcJ_G0034456
protein coding gene Chr9:19243810-19264299 (-)
C3H/HeJ MGP_C3HHeJ_G0034168
protein coding gene Chr9:20068722-20088767 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034977
protein coding gene Chr9:20561226-20582289 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031907
protein coding gene Chr9:18465458-18485584 (-)
CAST/EiJ MGP_CASTEiJ_G0033491
protein coding gene Chr9:19916666-19936766 (-)
CBA/J MGP_CBAJ_G0034141
protein coding gene Chr9:21343199-21363238 (-)
DBA/2J MGP_DBA2J_G0034299
protein coding gene Chr9:19331317-19351800 (-)
FVB/NJ MGP_FVBNJ_G0034242
protein coding gene Chr9:18897123-18917162 (-)
LP/J MGP_LPJ_G0034385
protein coding gene Chr9:19949684-19971242 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034286
protein coding gene Chr9:22907973-22928012 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034997
protein coding gene Chr9:19717369-19737414 (-)
PWK/PhJ MGP_PWKPhJ_G0033196
protein coding gene Chr9:19355336-19375332 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033030
protein coding gene Chr9:19770590-19790578 (-)
WSB/EiJ MGP_WSBEiJ_G0033606
protein coding gene Chr9:19463070-19482840 (-)



Homology
more
  • Human Ortholog
    RP9, RP9, pre-mRNA splicing factor
  • Vertebrate Orthologs
    7
  • Human Ortholog
    RP9, RP9, pre-mRNA splicing factor
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PAP1, PAP-1
  • Links
    NCBI Gene ID: 6100
    neXtProt AC: NX_Q8TA86
    UniProt: Q8TA86

  • Chr Location
    7p14.3; chr7:33094797-33109390 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human RP9 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 55934 NCBI Gene Model | MGI Sequence Detail 20046 C57BL/6J ±  kb
transcript NM_018739 RefSeq | MGI Sequence Detail 1142 C57BL/6  
polypeptide P97762 UniProt | EBI | MGI Sequence Detail 213 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 100
    cDNA 100

    Microarray probesets 3
References
more
  • Summaries
    All 32
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:63919 Maita H, et al., PAP-1, a novel target protein of phosphorylation by pim-1 kinase. Eur J Biochem. 2000 Aug;267(16):5168-78
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory