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Rp9
Gene Detail
Symbol

Name
ID
Rp9
retinitis pigmentosa 9 (human)
MGI:2157166
Synonyms
PAP-1, Rp9h
Feature Type
protein coding gene
Genetic Map
Chromosome 9
9.16 cM, cytoband A4
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr9:22448311-22468356 bp, - strand
From NCBI annotation of GRCm38

  20046 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10290  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Rp9

Human
homologs
Human Homolog RP9, retinitis pigmentosa 9 (autosomal dominant)
NCBI Gene ID 6100
neXtProt AC  NX_Q8TA86
Human Synonyms  PAP1, PAP-1
Human Chr (Location)  7p14.3; chr7:33094797-33109390 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human RP9
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(4) Targeted(2)
Incidental mutations (data from Mutagenetix )
Interactions
Rp9 interacts with 29 markers (Mir122, Mir127, Mir140, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process cognition
Component nuclear speck, nucleus, ...
Function metal ion binding, nucleic acid binding, ...
External Resources: FuncBase
Expression
cDNA source data(99)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(99) cDNA(99)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000032239 (Evidence)
Entrez Gene55934 (Evidence)
UniGene38235
DFCITC1576937
DoTSDT.536313, DT.101408934, DT.101408933
NIA Mouse Gene IndexU030614
Consensus CDS ProjectCCDS40564.1
International Mouse Knockout Project StatusRp9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 55934 NCBI Gene Model | MGI Sequence Detail 20046 C57BL/6J ±  kb
transcript NM_018739 RefSeq | MGI Sequence Detail 1142 C57BL/6 
polypeptide P97762 UniProt | EBI | MGI Sequence Detail 213 Not Applicable 

For the selected sequences
All sequences(32) RefSeq(2) UniProt(9)
Polymorphisms
SNPs within 2kb(112 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001878 Zinc finger, CCHC-type
Protein Ontology PR:000014169 retinitis pigmentosa 9 protein
Graphical View of Protein Domain Structure
References
(Earliest) J:63919 Maita H, et al., PAP-1, a novel target protein of phosphorylation by pim-1 kinase. Eur J Biochem. 2000 Aug;267(16):5168-78
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory