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Phf5a Gene Detail
Summary
  • Symbol
    Phf5a
  • Name
    PHD finger protein 5A
  • Synonyms
    1110007B08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2156864
    NCBI Gene: 68479
Location & Maps
more
  • Sequence Map
    Chr15:81865319-81871911 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      6593 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 38.26 cM, cytoband E
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    PHF5A, PHD finger protein 5A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PHF5A, PHD finger protein 5A
    Orthology source: HGNC, HomoloGene
  • Synonyms
    bK223H9.2, INI, Rds3, SAP14b, SF3b14b, SF3B7
  • Links
    NCBI Gene ID: 84844
    neXtProt AC: NX_Q7RTV0

  • Chr Location
    22q13.2; chr22:41459717-41468704 (-)  GRCh38.p2

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from multigenic genotypes
    25 phenotype references
  • All Mutations and Alleles
    56
  • Chemically induced (other)
    1
  • Gene trapped
    49
  • Radiation induced
    2
  • Targeted
    3
  • Transgenic
    1
  • Genomic Mutations
    3 involving Phf5a
  • Incidental Mutations
Mice homozygous for a transgenic gene disruption may exhibit embryonic lethality at E6.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034901 VEGA Gene Model | MGI Sequence Detail 6593 C57BL/6J ±  kb
transcript OTTMUST00000088730 VEGA | MGI Sequence Detail 864 Not Applicable  
polypeptide OTTMUSP00000048396 VEGA | MGI Sequence Detail 110 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    72 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000012652 PHD finger-like domain-containing protein 5A
  • InterPro Domains
    IPR005345 PHF5-like
Molecular
Reagents
less
  • All nucleic 85
    Genomic 1
    cDNA 84

    Microarray probesets 3
Other
Accession IDs
less
MGI:1915729
References
more
  • Summaries
    All 32
    Developmental Gene Expression 5
    Diseases 1
    Gene Ontology 6
    Phenotypes 25
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:209112 Shimizu H, et al., The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. PLoS One. 2013;8(10):e75754

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory