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Rnf39 Gene Detail
Summary
  • Symbol
    Rnf39
  • Name
    ring finger protein 39
  • Synonyms
    LIRF, LOC240094, LOC386454, LOC386465
  • Feature Type
    protein coding gene
  • IDs
    MGI:2156378
    NCBI Gene: 386454
  • Gene Overview
    MyGene.info: RNF39
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:36943051-36947986 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 19.16 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2156378
protein coding gene Chr17:36942918-36947986 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023687
protein coding gene Chr17:37298906-37303968 (+)
A/J MGP_AJ_G0023645
protein coding gene Chr17:36122206-36127258 (+)
AKR/J MGP_AKRJ_G0023616
protein coding gene Chr17:36557057-36562109 (+)
BALB/cJ MGP_BALBcJ_G0023652
protein coding gene Chr17:36364841-36369907 (+)
C3H/HeJ MGP_C3HHeJ_G0023414
protein coding gene Chr17:37071104-37076156 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024090
protein coding gene Chr17:38893602-38898670 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021558
protein coding gene Chr17:33937625-33942682 (+)
CAST/EiJ MGP_CASTEiJ_G0022899
protein coding gene Chr17:37202718-37207786 (+)
CBA/J MGP_CBAJ_G0023391
protein coding gene Chr17:40411695-40416747 (+)
DBA/2J MGP_DBA2J_G0023516
protein coding gene Chr17:35514842-35519908 (+)
FVB/NJ MGP_FVBNJ_G0023489
protein coding gene Chr17:35123331-35128395 (+)
LP/J MGP_LPJ_G0023594
protein coding gene Chr17:37828732-37833794 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023512
protein coding gene Chr17:39206322-39211386 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024135
protein coding gene Chr17:36896934-36902004 (+)
PWK/PhJ MGP_PWKPhJ_G0022651
protein coding gene Chr17:34293374-34298435 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022470
protein coding gene Chr17:34981591-34986506 (+)
WSB/EiJ MGP_WSBEiJ_G0022966
protein coding gene Chr17:37216212-37221276 (+)



Homology
more
  • Human Ortholog
    RNF39, ring finger protein 39
  • Vertebrate Orthologs
    7
  • Human Ortholog
    RNF39, ring finger protein 39
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HZF, HZFW, LIRF
  • Links
    NCBI Gene ID: 80352
    neXtProt AC: NX_Q9H2S5
    UniProt: Q9H2S5

  • Chr Location
    6p22.1; chr6:30070266-30080625 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 386454 NCBI Gene Model | MGI Sequence Detail 4936 C57BL/6J ±  kb
transcript NM_001099632 RefSeq | MGI Sequence Detail 1446 Not Specified  
polypeptide NP_001093102 RefSeq | MGI Sequence Detail 352 Not Specified  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 2
Other
Accession IDs
less
MGI:2685166, MGI:2686632, MGI:2686633, MGI:3040799
References
more
  • Summaries
    All 16
    Phenotypes 3
  • Earliest
    J:73110 Matsuo R, et al., LIRF, a Gene Induced during Hippocampal Long-Term Potentiation as an Immediate-Early Gene, Encodes a Novel RING Finger Protein. Biochem Biophys Res Commun. 2001 Nov 30;289(2):479-84
  • Latest
    J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory