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Snip1 Gene Detail
Summary
  • Symbol
    Snip1
  • Name
    Smad nuclear interacting protein 1
  • Synonyms
    2410133M08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2156003
    NCBI Gene: 76793
  • Gene Overview
    MyGene.info: SNIP1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:125066672-125074042 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 57.99 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    73 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2156003
protein coding gene Chr4:125066672-125074054 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028763
protein coding gene Chr4:126650546-126657920 (+)
A/J MGP_AJ_G0028722
protein coding gene Chr4:121670184-121677553 (+)
AKR/J MGP_AKRJ_G0028675
protein coding gene Chr4:125008752-125016131 (+)
BALB/cJ MGP_BALBcJ_G0028745
protein coding gene Chr4:122260397-122267723 (+)
C3H/HeJ MGP_C3HHeJ_G0028459
protein coding gene Chr4:125087027-125095638 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029187
protein coding gene Chr4:131513514-131522593 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026460
protein coding gene Chr4:114837447-114845317 (+)
CAST/EiJ MGP_CASTEiJ_G0027892
protein coding gene Chr4:123160677-123168062 (+)
CBA/J MGP_CBAJ_G0028425
protein coding gene Chr4:134795095-134802463 (+)
DBA/2J MGP_DBA2J_G0028574
protein coding gene Chr4:122141575-122148951 (+)
FVB/NJ MGP_FVBNJ_G0028541
protein coding gene Chr4:120771318-120778951 (+)
LP/J MGP_LPJ_G0028675
protein coding gene Chr4:126935170-126942489 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028567
protein coding gene Chr4:139769676-139777052 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029225
protein coding gene Chr4:125359709-125367279 (+)
PWK/PhJ MGP_PWKPhJ_G0027613
protein coding gene Chr4:118573349-118580822 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027439
protein coding gene Chr4:121147532-121155084 (+)
WSB/EiJ MGP_WSBEiJ_G0027972
protein coding gene Chr4:125441550-125448882 (+)



Homology
more
  • Human Ortholog
    SNIP1, Smad nuclear interacting protein 1
  • Vertebrate Orthologs
    12
  • Human Ortholog
    SNIP1, Smad nuclear interacting protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PML1, PMRED
  • Links
    NCBI Gene ID: 79753
    neXtProt AC: NX_Q8TAD8
    UniProt: Q8TAD8

  • Chr Location
    1p34.3; chr1:37534449-37554344 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 110886
    1 human;1 mouse;2 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SNIP1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 2 genetic backgrounds
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000050213 Ensembl Gene Model | MGI Sequence Detail 7371 C57BL/6J ±  kb
    transcript ENSMUST00000052183 Ensembl | MGI Sequence Detail 2345 Not Applicable  
    polypeptide ENSMUSP00000060721 Ensembl | MGI Sequence Detail 383 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 60
      cDNA 60

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1924043
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 6
      Gene Ontology 5
      Phenotypes 14
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:209956 Liakath-Ali K, et al., Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen. Nat Commun. 2014;5:3540

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory