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Snip1
Gene Detail
 Symbol
Name
ID
Snip1
Smad nuclear interacting protein 1
MGI:2156003
Synonyms 2410133M08Rik
Feature Type protein coding gene
Genetic Map
Chromosome 4
57.99 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:125066672-125074042 bp, + strand
From VEGA annotation of GRCm38

  7371 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:110886  Vertebrate Homology Class
1 human; 1 mouse; 2 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

Gene Tree: Snip1

Human
homologs
Human Homolog SNIP1, Smad nuclear interacting protein 1
NCBI Gene ID 79753
neXtProt AC  NX_Q8TAD8
Human Synonyms  PMRED
Human Chr (Location)  1p34.3; chr1:37534449-37554344 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human SNIP1
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snip1 interacts with 201 markers (Mir1b, Mir7b, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process gene silencing by RNA, I-kappaB kinase/NF-kappaB signaling, ...
Component nucleus
Function poly(A) RNA binding, protein binding
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (43)    Tissues (34)    Images (5)
Theiler Stages: 15, 17, 19, 22, 23, 26, 28
Assay TypeResults
Immunohistochemistry 5
RNA in situ 38
cDNA source data(59)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(59) cDNA(59)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000009251 (Evidence)
Ensembl Gene ModelENSMUSG00000050213 (Evidence)
Entrez Gene76793 (Evidence)
UniGene22548
DFCITC1576691, TC1622733
DoTSDT.530765, DT.91332114
NIA Mouse Gene IndexU004796
Consensus CDS ProjectCCDS18636.1
International Mouse Knockout Project StatusSnip1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009251 VEGA Gene Model | MGI Sequence Detail 7371 C57BL/6J ±  kb
transcript OTTMUST00000020945 VEGA | MGI Sequence Detail 2345 Not Applicable 
polypeptide OTTMUSP00000009599 VEGA | MGI Sequence Detail 383 Not Applicable 

For the selected sequences
All sequences(31) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(73 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000253 Forkhead-associated (FHA) domain
InterPro IPR008984 SMAD/FHA domain
Protein Ontology PR:000015328 smad nuclear-interacting protein 1
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:209112 Shimizu H, et al., The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. PLoS One. 2013;8(10):e75754
All references(38)
Other
accession IDs
MGI:1924043

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory