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Snip1
Gene Detail
Symbol

Name
ID
Snip1
Smad nuclear interacting protein 1
MGI:2156003
Synonyms
2410133M08Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 4
57.99 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:125066672-125074042 bp, + strand
From VEGA annotation of GRCm38

  7371 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:110886  Vertebrate Homology Class
1 human; 1 mouse; 2 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: SNIP1
Gene Tree: Snip1

Human
homologs
SNIP1, Smad nuclear interacting protein 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 79753
neXtProt AC: NX_Q8TAD8

Human Synonyms: PMRED

Human Chr (Location): 1p34.3; chr1:37534449-37554344 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human SNIP1

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(1) Targeted(4)
Genomic Mutations involving Snip1 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snip1 interacts with 201 markers (Mir1b, Mir7b, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process gene silencing by RNA, I-kappaB kinase/NF-kappaB signaling, ...
Component cytoplasm, nucleoplasm, ...
Function poly(A) RNA binding, protein binding
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (43)    Tissues (34)    Images (5)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 5
RNA in situ 38
cDNA source data(59)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: GEISHA SNIP1 ; Xenbase snip1 ; ZFIN snip1    NEW 
Molecular
reagents
All nucleic(59) cDNA(59)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000009251 (Evidence)
Ensembl Gene Model ENSMUSG00000050213 (Evidence)
Entrez Gene 76793 (Evidence)
UniGene 22548
DFCI TC1576691, TC1622733
DoTS DT.530765, DT.91332114
NIA Mouse Gene Index U004796
Consensus CDS Project CCDS18636.1
International Mouse Phenotyping Consortium Status Snip1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009251 VEGA Gene Model | MGI Sequence Detail 7371 C57BL/6J ±  kb
transcript OTTMUST00000020945 VEGA | MGI Sequence Detail 2345 Not Applicable 
polypeptide OTTMUSP00000009599 VEGA | MGI Sequence Detail 383 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(73 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000253 Forkhead-associated (FHA) domain
InterPro IPR008984 SMAD/FHA domain
Protein Ontology PR:000015328 smad nuclear-interacting protein 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:209956 Liakath-Ali K, et al., Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen. Nat Commun. 2014;5:3540
All references(38)
Other
accession IDs
MGI:1924043

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory