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Caln1 Gene Detail
Summary
  • Symbol
    Caln1
  • Name
    calneuron 1
  • Synonyms
    9630012C17Rik, Cabp8
  • Feature Type
    protein coding gene
  • IDs
    MGI:2155987
    NCBI Gene: 140904
  • Gene Overview
    MyGene.info: CALN1
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:130369356-130846325 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 69.29 cM, cytoband F
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2458 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2155987
 protein coding gene Chr5:130369356-130847412 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030146
 protein coding gene Chr5:134512707-135045705 (+)
A/J MGP_AJ_G0030114
 protein coding gene Chr5:128829121-129318135 (+)
AKR/J MGP_AKRJ_G0030047
 protein coding gene Chr5:133011107-133516067 (+)
BALB/cJ MGP_BALBcJ_G0030124
 protein coding gene Chr5:130183359-130664598 (+)
C3H/HeJ MGP_C3HHeJ_G0029840
 protein coding gene Chr5:133578861-134090193 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030577
 protein coding gene Chr5:139661281-140189439 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027802
 protein coding gene Chr5:123208483-123686408 (+)
CAST/EiJ MGP_CASTEiJ_G0029250
 protein coding gene Chr5:132907520-133430744 (+)
CBA/J MGP_CBAJ_G0029810
 protein coding gene Chr5:145095680-145687893 (+)
DBA/2J MGP_DBA2J_G0029961
 protein coding gene Chr5:128792742-129274067 (+)
FVB/NJ MGP_FVBNJ_G0029916
 protein coding gene Chr5:127885619-128374442 (+)
LP/J MGP_LPJ_G0030049
 protein coding gene Chr5:135016854-135550168 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029948
 protein coding gene Chr5:148422968-148949379 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030617
 protein coding gene Chr5:132705407-133227025 (+)
PWK/PhJ MGP_PWKPhJ_G0028964
 protein coding gene Chr5:127735542-128246861 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028800
 protein coding gene Chr5:130283020-130814104 (+)
WSB/EiJ MGP_WSBEiJ_G0029323
 protein coding gene Chr5:133422749-133939195 (+)



Homology
more
  • Human Ortholog
    CALN1, calneuron 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CALN1, calneuron 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CABP8
  • Links
    NCBI Gene ID: 83698
    neXtProt AC: NX_Q9BXU9
    UniProt: Q9BXU9

  • Chr Location
    7q11.22; chr7:71779491-72504271 (-)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 10966
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CALN1
  • Gene Tree
    Caln1
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    57
  • Tissues
    33
  • cDNA Data
    13
  • Literature Summary
    3
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 140904 NCBI Gene Model | MGI Sequence Detail 476970 C57BL/6J ±  kb
transcript NM_021371 RefSeq | MGI Sequence Detail 2586 C57BL/6  
polypeptide Q9JJG7 UniProt | EBI | MGI Sequence Detail 219 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 3
Other
Accession IDs
less
MGI:2444767
References
more
  • Summaries
    All 33
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/06/2018
MGI 6.13 		The Jackson Laboratory