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Col26a1
Gene Detail
Symbol

Name
ID
Col26a1
collagen, type XXVI, alpha 1
MGI:2155345
Synonyms
9430032K24Rik, Collagen XXVI, Emid2, Emu2, MGC:7475
Feature Type
protein coding gene
Genetic Map
Chromosome 5
76.03 cM, cytoband G1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr5:136741759-136883209 bp, - strand
From VEGA annotation of GRCm38

  141451 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:136636  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chicken; 1 western clawed frog

HCOP human homology predictions: COL26A1
Gene Tree: Col26a1

Human
homologs
COL26A1, collagen, type XXVI, alpha 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 136227
neXtProt AC: NX_Q96A83

Human Synonyms: EMI6, EMID2, EMU2, SH2B

Human Chr (Location): 7q22.1; chr7:101362820-101559024 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(2) Targeted(2)
Incidental mutations (data from APF , CvDC )
Interactions
Col26a1 interacts with 142 markers (Mir24-1, Mir24-2, Mir26a-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process positive regulation of cell-substrate adhesion
Component collagen trimer, endoplasmic reticulum, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (257)    Tissues (15)    Images (25)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 252
RT-PCR 5
cDNA source data(52)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(53) cDNA(52) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000022688 (Evidence)
Ensembl Gene Model ENSMUSG00000004415 (Evidence)
Entrez Gene 140709 (Evidence)
UniGene 295020
DFCI TC1577281, TC1587149, TC1621257, TC1624091
DoTS DT.101382555, DT.491772, DT.91417803, DT.91421318
NIA Mouse Gene Index U026835
Consensus CDS Project CCDS19755.1
International Mouse Phenotyping Consortium Status Col26a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022688 VEGA Gene Model | MGI Sequence Detail 141451 C57BL/6J ±  kb
transcript OTTMUST00000054403 VEGA | MGI Sequence Detail 2724 Not Applicable 
polypeptide OTTMUSP00000025968 VEGA | MGI Sequence Detail 440 Not Applicable 

For the selected sequences
All sequences(69) RefSeq(18) UniProt(2)
Polymorphisms
SNPs within 2kb(952 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
InterPro IPR011489 EMI domain
Protein Ontology PR:000007052 collagen alpha-1(XXVI) chain
References
(Earliest) J:7899 Sutton VR, et al., Identification of two forms of the Ly-6.2 antigen showing differential expression. Immunogenetics. 1985;21(6):539-47
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGI:1924594, MGI:1933106, MGI:2653242

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory