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Emid1 Gene Detail
Summary
  • Symbol
    Emid1
  • Name
    EMI domain containing 1
  • Synonyms
    CO-5, Emu1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2155091
    NCBI Gene: 140703
  • Gene Overview
    MyGene.info: EMID1
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:5106265-5152257 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 3.26 cM, cytoband A1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    136 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2155091
protein coding gene Chr11:5106265-5152297 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017998
protein coding gene Chr11:2129214-2180453 (-)
A/J MGP_AJ_G0017971
protein coding gene Chr11:2066224-2113312 (-)
AKR/J MGP_AKRJ_G0017935
protein coding gene Chr11:2165658-2221444 (-)
BALB/cJ MGP_BALBcJ_G0017939
protein coding gene Chr11:2044217-2091830 (-)
C3H/HeJ MGP_C3HHeJ_G0017752
protein coding gene Chr11:2064476-2114725 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018391
protein coding gene Chr11:2200060-2252146 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016049
protein coding gene Chr11:1959782-2006697 (-)
CAST/EiJ MGP_CASTEiJ_G0017314
protein coding gene Chr11:2025035-2072289 (-)
CBA/J MGP_CBAJ_G0017727
protein coding gene Chr11:2502476-2554537 (-)
DBA/2J MGP_DBA2J_G0017837
protein coding gene Chr11:1965464-2011152 (-)
FVB/NJ MGP_FVBNJ_G0017829
protein coding gene Chr11:2005641-2051795 (-)
LP/J MGP_LPJ_G0017908
protein coding gene Chr11:2208085-2257022 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017855
protein coding gene Chr11:2126126-2174809 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018431
protein coding gene Chr11:2166401-2215987 (-)
PWK/PhJ MGP_PWKPhJ_G0017094
protein coding gene Chr11:1983490-2032992 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016891
protein coding gene Chr11:2154809-2203835 (-)
WSB/EiJ MGP_WSBEiJ_G0017368
protein coding gene Chr11:2033788-2081948 (-)



Homology
more
  • Human Ortholog
    EMID1, EMI domain containing 1
  • Vertebrate Orthologs
    5
  • Human Ortholog
    EMID1, EMI domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    EMI5, EMU1
  • Links
    NCBI Gene ID: 129080
    neXtProt AC: NX_Q96A84
    UniProt: Q96A84

  • Chr Location
    22q12.2; chr22:29205912-29259597 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000034164 Ensembl Gene Model | MGI Sequence Detail 45993 C57BL/6J ±  kb
    transcript ENSMUST00000062821 Ensembl | MGI Sequence Detail 1947 Not Applicable  
    polypeptide ENSMUSP00000061704 Ensembl | MGI Sequence Detail 444 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      7 Sequences
    • InterPro Domains
      IPR008160 Collagen triple helix repeat
      IPR011489 EMI domain
    Molecular
    Reagents
    less
    • All nucleic 53
      cDNA 53

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2144498
    References
    more
    • Summaries
      All 28
      Developmental Gene Expression 2
      Gene Ontology 3
      Phenotypes 5
    • Earliest
      J:54434 Leimeister C, et al., Screen for genes regulated during early kidney morphogenesis. Dev Genet. 1999;24(3-4):273-83
    • Latest
      J:265604 Naba A, et al., The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices. Mol Cell Proteomics. 2012 Apr;11(4):M111.014647

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    10/08/2019
    MGI 6.14
    The Jackson Laboratory